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54-0796-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19601301 [Map]; Strand: c
      • AT2G47860.2 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G47860.3 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G47860.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-0796-1 - 5-prime edge 
    TCTGCGAGTG CTATAAACTT GGAGGGAGGA AGGCTCGAGT CCAGAGCCAC 
    CTCAGCGAGA TAACTATCCA TCAGCTTCGA CACCTTGAAG ATGGAGCTCT 
    GTTTCGGTGA CTCAGCCCCC TCGAAATCGT ACATGGCCAT CTCGCTCTCG 
    TCCACCGCGT CCTCCTCGTC GTCATCATCA TCTCTGTACT CGCACTCGTC 
    AAGGTTCAAG AACATTGAGA AAATCCTCTG CACCGAGTCG GTGTCGTACA 
    TGGCGCCGAT GTTCGCCGGA ATAAGGATGT CTTCAAGGAT GGCCTGGTCG 
    AGCAGGTGGC TGATCCGTCT CTCCAGATCG GATCTGCAAG AGACGGAGGT 
    GCCAGATCCT ATAGCGGTCT TCAACAAGCT AGAGAGGAAC GAGATCGGAA 
    TCGAGCTTTT GTTCGCTTGC GTTGGGAGGA GCCCGACGAC CGCTTCAAGG 
    ACGATTCGCT GTTTCCTCTG AAGATCGGAA TCTGATTTGA CGAGATTCGG 
    TTCTCTGATG ATCTGCAGTG ATTTGCGAGC GTAGCTCATA AGGATGTCAC 
    TGATAATGTC GTGATTGAGA CCTTTGGACT TCATGGCGGA GAGAACTCTC 
    TGGAAGAAAT CAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19601368 [Map]; Strand: c
      • AT2G47860.2 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G47860.3 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G47860.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-0796-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCGCAGAGCT TCTCCCTGAC CATGCTCGCG TCGTCTGCGA TGGCCTCTAC 
    CGAGCCGTTG ATATCTTCCT CAAGGTATAA AAGAGTCTGC TTTTGAGAAT 
    GAGTGTTGTA TGATTTTGAT TGCTGTGTTA CNGGTTTTGT ATTAGGTTCA 
    CCCCCACATG AAAGATTCGG AACGTTACCG TCTCTGCAAG ACAGTCAGCT 
    GTAAGAAACT GTCGCAGGAC GCAAGCAGCC ACGCGGCGCA AAACGAGAGA 
    CTTCCGGTTC AGATTGCGGT TCAAGTCCTG TTCTACGAAC AGACACGGCT 
    CAAGAACGCC ATGACCAGCG GCGGTGGCAC AGGCGGTTCG AACCAAAGCC 
    AGTTCTTCTT GTTCCCAAAC CGCTCGGGAA GCGGGATGGC AAGCGGAGCC 
    ATCTCGCCGA GGGACAACTA TGCATCAGTG AGAAGAGAGA ACAGAGAGCT 
    GAGACTAGAG GTGGCCAGGA TGAGGATGAG GCTAACGGAC CTGGAGAAAG 
    ATCATGTATC GATGAAGAGA GACTTCGTGA AGCCGCAGAG CAGGAGGAGG 
    CGTTATGGAA TGTTGAGGAA GCTCTCGAGA GGTCTGAACA AGTTGAACGC 
    AATCGTTTTG AGATTTAGGA GCAGCCAAAG TGTTGCCAGT AGCGGTAAAA 
    AGCATACGGA GGAGAAAACG AATT

AT2G47860.1

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1); Has 884 Blast hits to 856 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 876; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47860.2

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47860.3

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1).
Link
InterPro Scan - TAIR