1. Home
  2. Mutant Lines
  3. 54-0828-1

54-0828-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18023712 [Map]; Strand: w
      • AT4G38545.2 - [+] show detail - other RNA
        Distance: 0; Region: intron3 (NonCoding)
      • AT4G38545.1 - [+] show detail - other RNA
        Distance: 0; Region: intron3 (NonCoding)
      • AT4G38540.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 54-0828-1 - 5-prime edge 
    CTGCACAGAG CATATGAATG TTAAAACAAT AAATAAGATA ACTTCAATAA 
    TCTTGTTGAA TGGTTTTGTC AGAGAATATG AGTCTCGATG CGTACAGAGG 
    AAGCTGTTGT TAGAGGCTCT AGCAGGTGAG TTGCCTGAAG AGACCATCAG 
    GTTTTCGTCT NATGTTGTTC ATATTGAATT GTCTGGATGC TACAAGAAGG 
    TTCATCTCTC CGACGGGACC ATTCTCAAAA CCAAGGTAAA TAACTACTTG 
    TCCTCTGTAA ACCATGTGAG GCCTGGTCTT GCTACGGAAT TGTAGGGTTT 
    CTAAACGAAA TGCAGGTTTT GGTANGGTGC GATGGANTGT ACTCANTGGT 
    TGGTAAGTGG CTANGCTTCA AAAATCCCGC TACAACTGCC CGGTTAGCAA 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18023596 [Map]; Strand: w
      • AT4G38545.2 - [+] show detail - other RNA
        Distance: 0; Region: exon4 (NonCoding)
      • AT4G38545.1 - [+] show detail - other RNA
        Distance: 0; Region: exon4 (NonCoding)
      • AT4G38540.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-0828-1 - 3-prime edge 
    CTGTGCAGAG AAGAAGAAAC ATACTCGGAT TCTGGAAACA GCATCTCTGT 
    GGGAGGAGTT CCTGCAGAAA TTGTTCCAAC CACCCATCTG CAGCAAAATC 
    AAAGATGAGT CCCCTTTTTT ACTGAGCTGA TTATATATGA ATAGTAATAT 
    TAGTGTTAGT TTGATACCCT TCAAGGCGAT CATGGAGACT GCGAATATGC 
    TGAGAAACGC CGAGAGCTTC CATGGCCTTC CAAGCATTGA ACCAAGTGGT 
    AAATGCAAAT CCTGTCGCTC TCAGTGTCTC CGAAGATTCC AGCACCATGC 
    TTCTGATCCC AAGCCTGTGA CACACACCAC TTTAGTTAAC TTACTCTGCT 
    TTATAACAAC TCAAAAGGCA CGCCACACAC ACCTGTGTAG TCCAACAGCG 
    GTGGAAAGGC CGGAGATACC GGCGCCAACG ATGATGATAT CTGGGCTGCC 
    TTCTTCTTCC ATGGTGCGTT GATGATCTTA GAAAGAAAGC TCTGTTTTTC 
    TTGCTCTCTT GTATTTATTT TTAACTTTCA AGTAAACAAA AAGAAATGTG 
    GTTGAAGTTG GCAAGTCAAA CAAGGCACCC CGTTCTAGGC AGGCGGCTAC 
    AGTCATCAAA TATCGAATCT TTAATAGTAT TTATATGTTG TCACACTTTA 
    TCCCGTTCTA GCTAGGGCGC AAATAATTGT ACATTATAAA TTTATNAACG 
    TGCAAACAGA GATACACACT

AT4G38540.1

Model type
Protein coding
Short Description
FAD/NAD(P)-binding oxidoreductase family protein
Computational Description
FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: monooxygenase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Monooxygenase, FAD-binding (InterPro:IPR002938); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT5G05320.1); Has 5392 Blast hits to 5382 proteins in 1070 species: Archae - 48; Bacteria - 3093; Metazoa - 5; Fungi - 1172; Plants - 539; Viruses - 0; Other Eukaryotes - 535 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38545.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G38530 and AT4G38540
Link
InterPro Scan - TAIR

AT4G38545.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G38530 and AT4G38540
Link
InterPro Scan - TAIR