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54-0830-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18972699 [Map]; Strand: w
      • AT3G51075.1 - [+] show detail - other RNA
        Distance: -414; Region: promoter
      • AT3G51080.1 - [+] show detail - GATA transcription factor 6
        Distance: -514; Region: promoter
    Flanking Genome Sequence: 54-0830-3 - 5-prime edge 
    CTATTGACAG GTAGCGAAAA GTCAAATTAC AAAAGGAATA AAGTAGACAT 
    GAAATGAAAC CAACAATCTT AAGCCCACAT ATGAATTCAA AAGAGAGGTT 
    AAGAAAGAAG AGAATCTGAC ATCATGGGCA GAGTAGGAGC TGAAGAAGAT 
    GGGTTTCTGC NNNTTTGAAG CTTTTAATCG CATATCGCTG AGTAATCATC 
    ACAAACAGTT TTGAATTGAA GAAGACGGGA GGAGAAAAGC CATTGTTAAT 
    GAGATACCCA AATCGTAAAA TTTCAGAAAG CCCAGCCCAA CATAGCCCNN 
    TACAGNCCAA ATATGTATGT GATTGGGTAA CGAAAACGAG ACCGTTCTTT 
    TTTCAGTCAT CTCTAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18972583 [Map]; Strand: w
      • AT3G51075.1 - [+] show detail - other RNA
        Distance: -298; Region: promoter
      • AT3G51080.1 - [+] show detail - GATA transcription factor 6
        Distance: -630; Region: promoter
    Flanking Genome Sequence: 54-0830-3 - 3-prime edge 
    GTCAATAGCT TATGGTGAAT TTGGCTTGTG GTATCGCTAA AGCATCATAA 
    TCTCTTCTTC ATTACTGCTA TGTTTCTACT TGTTGGAACA AAATTTCATT 
    TATTGGTGTG CCTTACTTTT CCCAGTGAAA TGATTCATAG CCTTACAAGA 
    GAATATCATA ACCATGTTAA AAAAAGCAAT ATGAAGTAAG GAAAACAAAA 
    ATGTTCTAAT TAGTCTATAT AGTTTAAGAA CACTAAAGCT ATTTCTTATA 
    CTGACAAATT CTTTTGGGGA TTATAGATAT GAGTAGTGTG TTGTATTATA 
    ATGATGCTTC TGCTACTTTC AAATGCAGAT TCTCAGAGCG TCTTTCATTG 
    AGAAGTTTCT GGTCTCCAGA ATCCTTTTTG TGCACTTAAG ATTCCTTCTT 
    GGTGTTTGGA GAAAGTTAAG TGAACATCCC AGTGCAGTGA CTTCAACATG 
    TTCTCAACTT CTCTTATCAC ATTTGATTCG TCACGAACTA TTAGTTTACC 
    TCCTGGTCTT ACTATTCTAT CCACTTCTGC CATTACTGGA ACAAGATTGC 
    ACCTTTCAAA ACANAACNNA NCNNNNCANG ANACTTATTG TTGATGAAAC 
    GTTCCAAAAG GNGNGGTATT ATGAGTTACN CTTATACCNT GNNCTCANCT 
    TTGAAAAANA TGATCTGCTG NNAAAAAACA TANCTNNAGG GNTTGTGCTA 
    AANNANTCNN ACCNNCNTNA TTTTTNCCAA NAN

AT3G51075.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G51070
Link
InterPro Scan - TAIR

AT3G51080.1

Model type
Protein coding
Short Description
GATA transcription factor 6
Curator Summary
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational Description
GATA transcription factor 6 (GATA6); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 5 (TAIR:AT5G66320.2); Has 1500 Blast hits to 1468 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 554; Plants - 766; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR