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54-1081-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26443611 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-1081-1 - 3-prime edge 
    TCTGTTCAAG CTTACCTCCT TGGAGCAGAG GTCCCTTCTA ATCTATCTAT 
    TTCTTTATTT ATTTGTCCTT AGAGCAAATT TTGCCTTTCT TGAATGTGAG 
    TGTGTTTTAA TTTGGTGTGG TGCAGTTAGG GTTGGATTCT GTGCATTTCG 
    CGAGAATCGA TTACCAANAC AGAGAAAAGC GAAAGGCCGA GAAATCACTT 
    GAAGTCATCT GGAGAGGATC AAAAACACTG GATTCTTCTT CTCAGATATT 
    CACCAATATC TTCTTTGTTC ATTACGGCCC TCCCACTGGC TTTCACTATG 
    AAGTCACCGA CGATTACGTA CCCCTCCAGG TTCGCTTC

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR