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54-1082-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25787979 [Map]; Strand: c
      • AT5G64520.3 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
        Distance: -55; Region: promoter
      • AT5G64520.1 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
        Distance: -90; Region: promoter
      • AT5G64520.2 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
        Distance: -90; Region: promoter
    Flanking Genome Sequence: 54-1082-2 - 5-prime edge 
    CCCGGTGTCA CTCTTCCGAC GTGAAAGTCT CGGCGACTAG CCGGAGATAA 
    TGGTGAATTA AATATGGGCT TACAAGAGGA ATGCCTTACT AATGGGCCTT 
    AACTAAGTTA TAATTTAGGC CCAATATTAT ATATTAAATG TGGGCTTGCA 
    AATTTCCCTT CGTTTTATTT AAACAAAAAT TTAAAAATTT AACACCTTAT 
    CCAAAAAAAA ACTTTAATGT AATACAAAAA ATATAAGTTT AAAAACATTT 
    TTTAATAAAA GAAAAAACAA GTGTTAAAAA TCTAAATTAA ATGTAAACCA 
    TATTGAACCT AAAACACCTC TTAGGGGTTT GGATGATGTA TCCAATTAGT 
    TTACACCAAA TTTAAAAATT TAACACTTGT CCAAAAAAAA CTTTAAAGTT 
    TTAATAGTAA TATAAAACTA TAAGTTTGGA GATATTTTTG AATAAAAGAA 
    AAATAAATGT TAAAAATTTG TATAATCCTC AAAGAAATAG TTTGAATAGT 
    AAAAAAGTTT TAGTTAAAAT ATAAAAAAGA AAGAATACTT AAAATGAAAA 
    TTAAGATGAG ATAGAAATTG ACCTGACTAA TAAATTGGAT GGACTTTGAT 
    GGGTTTTGCA GTTCTTTATG GGCTGAATTT TCTTTTCTTA TTGTTGGGCT 
    CCGTAGGGTT ATTAANATTG CAATCCACCC GTTAGTTTCT NCACCACCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25788095 [Map]; Strand: c
      • AT5G64520.3 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
        Distance: 0; Region: exon1 (CDS)
      • AT5G64520.1 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
        Distance: 0; Region: exon1 (CDS)
      • AT5G64520.2 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1082-2 - 3-prime edge 
    ACACCGGGGC TAGCGCGTGA CGAGCGATGG GAGATGACGA AGCGCGTAGT 
    TGGATTCGCG GAGACGAGAC GGCGAAGCAG ATGTTATCAA GGGTTCTTAA 
    GGACCGTGCG TTCCTGCTTA TTCCGCCACT TCACCGTGTA CCTTTACGCG 
    CCGGGAACGT AGTCGAGATC ACCGGCGCAT CTACGTCAGC GAAAACTCAA 
    ATCCTGATTC AAGCTGCGAT CAGTTGCATT CTTCCTAAAA CGTGGAACGG 
    CATTCACTAT GGAGGATTAG GGAAACTGGT TTTGTTTCTC GATTTGGATT 
    GTCGCTTTGA TGTTCTCCGG TTATCTCAAA TGCTAAAGCA TCGTCTTCTT 
    CAAGCTAACT GTATGCAACT TTTGAATTTT CCCCTTCTTC TTAGCTTGCT 
    TTGGATTTTG CAGTCAGTTT CAAATTTATG AAATTGAGAT AATCTCAATC 
    ATACATAGGC TTCGATATTG AGATGTTCAA ATGTTAGTTC TTTTAGCGTA 
    TCAGGGTTAG GAAATGGAGC ATGGTGGCAA CTTGAGGAGT CAAATGTTAA 
    GAGTTGCAAA TCTGCAGAAG AGAAGACAAA GACTGTGTTT GATGAGGAGT 
    TATATGCTTC ATGCATGAAA AGGTTTCTGT ATGTTCGTTG CTATGATAGT 
    CTTGAACTAT TGTCCAGTCT CAAGGTAATG TTTTGAGTTG ATGTATCTCA 
    CATTGTTGGA TTTG

AT5G64520.1

Model type
Protein coding
Short Description
homolog of X-ray repair cross complementing 2 (XRCC2)
Curator Summary
Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.
Computational Description
homolog of X-ray repair cross complementing 2 (XRCC2) (XRCC2); Has 216 Blast hits to 214 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 49; Plants - 37; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G64520.2

Model type
Protein coding
Short Description
homolog of X-ray repair cross complementing 2 (XRCC2)
Curator Summary
Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.
Computational Description
homolog of X-ray repair cross complementing 2 (XRCC2) (XRCC2); Has 215 Blast hits to 213 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 37; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G64520.3

Model type
Protein coding
Short Description
homolog of X-ray repair cross complementing 2 (XRCC2)
Curator Summary
Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.
Computational Description
homolog of X-ray repair cross complementing 2 (XRCC2) (XRCC2); Has 186 Blast hits to 186 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 44; Plants - 31; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR