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54-1119-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26425758 [Map]; Strand: c
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -352; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-1119-1 - 5-prime edge 
    AGTTCAGCAA CTATCGCGAC GATTCCAGAA AACAATTCCA GAAAACAAAC 
    TTTTTTTTTG TTCTCTTATT TNGGTTCTGC CCACGGCTTG GACTAAATTN 
    TCGGTGAGGG GCTTNAATTC TTCTTATAAG GCCNAANCTA TATNTTAAAT 
    TTATTAACGG GCCATATNTT G

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26425861 [Map]; Strand: c
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -455; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1119-1 - 3-prime edge 
    GCTGAACTCC GTCGCAACTT CAATGGCATC TGCTCACTCC ATAGCCGCCG 
    TTTCTGTTCT CGATGCGGCC TCCAAGCAAG CAACACTTCC TTCTTCTTCT 
    TCTTCTTCCT CTGCGCTCTA CCCTCTTTCT TCTCTTCGAT CTAAACCTCG 
    CCAGCAGCGT TCTCTCCCTA CGCAGTGTCG CTCTCAAAGG TATCTTCTCT 
    TCTTTTTCTC TGTTTATTTG GAATACGAGT TGCTTCTCCT AAACGTAATA 
    GTCCAATTCT ACCTTTGTTG GGTACAGTCG CATTTCCAGT TTGAATTTTA 
    ATATAGTTTG GGACAACGAA GAGGGGAGTG ATTCAAATTA GCACAATCGT 
    AATGAGTAGT TGTTGATATG GTTAGTTTGT TGATGAGCCA ACAATGATTA 
    GTTTGTGGTT AGCTTAGGTC GAGTAAAGGC GCAGGCAAAA GAAGCAGAAG 
    CTAGTCCAAG TCCAGTGGGA GTGGGAGACG CATTCAGTAA TGTGAAGCAT 
    CTTCTCCTGC CGGTGATTGA TCGGAATCCT TATCTTTCTG AAGGCACCAG 
    ACAGGTTATT GTTTAGCTTG TTATCTTTTT GAGAACATGT TGACACCAAA 
    CAAAAAAGCT GATTACACTT AATTTGATAG GCTGCTGCTA CAACAACCAG 
    CTTGGCAAAG AAGTATGGAG CTGATATCAC AGTTGTAGGT AAGAACAATT 
    AGTGTTGCAT TAATATCCCC TTATGT

AT5G66080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR