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54-1121-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26436564 [Map]; Strand: c
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: 54-1121-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACAGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCNTCCA TCCTCTGTGT TGTTATGCCC ACTCATCTTN 
    CCTCTTATAT CAGCGAGAAG GAGATCAGCA TCCGCCAAAT ACGAAGAAAC 
    ACACCAGGCA TCTTCTATGG CTCCGTCNCT CACAAAATCT NACACTTCAT 
    TAACATAAAG AGTCCATTTT AGAAAATCTT TCNGNACGAA AAGNANAAAC 
    NNATGTACGT TNAGGNATGC TCTCATGTGT CACTCTATCN TGGAGGAAAT 
    AGCGCATATG CTNAGGGANA GACTGGATAG TCAANACTCA GGTACTGGGG 
    AGATACCACN AGGTGTAGAA ANTNCACACC CTGNNNTGNA TNNAAATGAA 
    NNNGGCNGAG AGNGNNCNAA GGCGNGGGGN GANAAAACTG GCAGGGNGGG 
    CAAACTTTTN TGGGGGNACC AGCGCTNCTG CTCTNATANA AAAAAAAGNG 
    GGTGGANTAT ACAAAANNTG AGNTTTAAAA AAGAGNNCTN NNNGCNNCCC 
    TAANNNGGGG GTTTTGNGAN NTTNTTGANA ACNACCNCCC TCTNANGGNG 
    GGGGGNAACC CNGNCTTTTN TTGGGGGNGA AAAAAAGGNC NCCCGNNGNG 
    GAAAAAANNN GGGGGGGTTT TTTNTNCCNC NNAAAAANNA NAANGTTNTN 
    GGCNAANACC ANANNAAAAN NGGGGTGGCG NNGNNCCGAC AAAAAGAAAN 
    TTTNNNCCCN CNNNCNNGGG GGGGGGGGGG GGGTTTTTNN TNGNNANNGN 
    AGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26436573 [Map]; Strand: c
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: 54-1121-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTC 
    CACAGTCAGC CGGTGCCTCG GTTGCTGTTC GTGGTGTGTT GTATGGAAAC 
    AAGCAGCCAT GTTCATCCAG GTTTCTTTTA CATACGGATA CCAGCTGACT 
    GTATTATAGT TTATTTGTTT GAAAATAATA TTATCGATTG ATCTGTATTG 
    TGATTATGCA GATGGCACGT GATTCGGAAG CCAAAACTCT GGCAAGTGGA 
    GCAATCCTCA ATACAAACAA AGGTCAGGGT CTTTCCCTTT TTTTTTCAGG 
    AATATAAACT AATTATACAT GTCCAATACA TATCAAACCT GTATATGCTT 
    ACAAATTTGA TGTGTGAATG CAGAAGAATC TGAGAGAGCA GAGGAACATA 
    AGCTATGAGG GGTCAAGAGT GGCAGATATA TCAGTGATGG CCACAGAGTA 
    TAGCCCCGTG CTGAAATGGC TTAGCTACAG GGCATCTCCA GATGCGTTTC 
    CGGGAATGGG CGAAGAGACA GATGAGGAGG ACAGTGATAT TTCTGATGAT 
    GATGAAATAC AAGACTGGTG ACATTCACCA TCTTAAGTGT CTTATATGTT 
    AGGTCAGATA GAACTGGTAT GATAGTTAAC AACTTAACAT CAAGGGAAGG 
    AACACTAATT GTTCTGCTTA CTTATAAATA GAAAATGGAG AGTCACTTCT 
    CTATCTAACA ATGAGCAACA GCAAATTTAT CCTTGGTTTG ATCAAGATCA 
    AGCGAATTTT AACCCTTTCT T

AT5G66130.1

Model type
Protein coding
Short Description
RADIATION SENSITIVE 17
Curator Summary
Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.
Computational Description
RADIATION SENSITIVE 17 (ATRAD17); INVOLVED IN: regulation of DNA repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G77620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR