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54-1126-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23420921 [Map]; Strand: c
      • AT3G63430.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-1126-2 - 5-prime edge 
    NCTTGTCNTC NNGAAAGTCA AATAGGTAGT CTCTGGTNNN CCNNTACTCG 
    GATGCAGATC TCTGGAGAGG CTGTTGGGGA AATGGCTCCA ATCCCATGAG 
    CCGTGCGATC ACACTGGGTG AGCCGCGCTG GTTCTCAGCC TCAACCGCTT 
    NTTNCTCGGA TCTGTCTGTG TTTGAGGCAG CCCTTGGCAT CCACGACGGC 
    TCTGCTATCG AGGGAGAGCC TCGGAGCTTC TTTAGAGAAC CTCCAAGGCC 
    TAGAGGAAGA AGAAGAAGAA GATCCTTGTT GAGCCGGCGC ANGAGAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26810175 [Map]; Strand: c
      • AT5G67190.1 - [+] show detail - DREB and EAR motif protein 2
        Distance: -486; Region: promoter
    Flanking Genome Sequence: 54-1126-2 - 3-prime edge 
    CTTTTAAGAG GATAGGCGGA AGAAGAGGTG GTGGAGATGA CATGCGCATT 
    CTTATTCTAT TATTATTTTT ATTTTTAAAT AATATATACA TATATTCTAC 
    TATCCATATG TATGATAGTA CCCAAACCTC TCTG

AT3G63430.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 135 Blast hits to 119 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 3; Plants - 119; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67190.1

Model type
Protein coding
Short Description
DREB and EAR motif protein 2
Curator Summary
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.
Computational Description
DREB and EAR motif protein 2 (DEAR2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cooperatively regulated by ethylene and jasmonate 1 (TAIR:AT3G50260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR