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54-1130-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26426228 [Map]; Strand: c
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -822; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-1130-1 - 5-prime edge 
    CATTACTGAA TGCGTCTCCC ACTCCCACTG GACTTGGACT AGCTTCTGCT 
    TCTTTTGCCT GCGCCTTTAC TCGACCTAAG CTAACCACAA ACTAATCATT 
    GTTGGCTCAT CAACAAACTA ACCATATCAA CAACTACTCA TTACGATTGT 
    GCTAATTTGA ATCACTCCCC TCTTCGTTGT CCCAAACTAT ATTAAAATTN 
    AAACTGGAAA TGCGACTGTA CCCAACANAG GTAGAATTGG ACTATTACGN 
    GTAGGAGAAG CAACTCGTAT TCCAAGATNA ACAGAGAAAN ANACNAGAAG 
    ATACCTTNGA GAGCGACACN GTATATGGAG AGAAGCNGCT GGCNANGTTN 
    AGAAAAAAGA NACCAANGGN GGGGNTNAGN GCAAAAGANN GAACNGGNGN 
    AGAANGNTGT GANAAANANG GAGGAGGNNN GGGNTNTTTT TTTTTNGGNG 
    NNGGGCCTNN TAAAAAAAAA AAAAGGGGNC NNNNGGGGAC NGNANANCCC 
    CCNNNGGGGG GGGGGGGNNG GNNNTAAAAA NNTNNAAANA AAAAANNGGN 
    NAANAGGANN AAAAAAAANN NGGGGNNTNN NNNGNNNGNN NTNNGAGGGG 
    GGCNCNCNCN CGGGGGGNGN NAGNNTATNN ANAGGNGNGG GGGTNNTTTT 
    TTTTNTTTGG GGGGGNNGNN NNAAAAAAAA NANNNNGGCC GGGNTNTNTA 
    NANAAAAANN NCAANAGAAG GNGNNTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26426343 [Map]; Strand: c
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -937; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-1130-1 - 3-prime edge 
    CANANNAGAN AANNNTCTTC NTCCTGCCGG NGANTGATNG NAATNCTTAT 
    CTTTCTGANG GCACCNNACA GGTTATTGTT TAGNTTGCTN TCTTTNTGAG 
    AACATGTNGA CACCAAACAC ANACNGNCTG ATNACACTAN AATNTTGANA 
    GGCNTGCTTG NTACAANAAC CACTCTGTGN CAAACGAAGT ATGGANCTGA 
    TNTCACANTT GTNGGTAANA ACAATTNGNG TNGCATTAAT ATCCCCTTAT 
    GTNTCATATG AATTATATAG CCGTGTTGAT CATCTGCGAC CACCGTTGTT 
    GATTCAATCA TTGACGAAGA AAAGAGAGAA TCATNTTNGG AGCATGAGAC 
    TCAAGTATCC AACATNCGGT GGCATTTGTC TGAAGGTAAA ATTGAGGAAT 
    TACTTGNAGG AAANTGTANG TAANACTATA GTGTTGGAAT CCCTTATTGA 
    ANAAAGGTTA ACTATAATGT GGTGGTTAGC CNGTGGGTTC NAGGAGTTCA 
    AGCTGTTGGA AGANGCTTGG GGAANGNAAA AAAGCNACNG CCNTAATANG 
    AGANGTGGCA GATGAGCTGA AAATGGANCT GNTGGTGATN ANCATGGAAG 
    CCNTCCACTC TAAGTACATT GACGNCCAAT CTACTAGCTG AGTNCATNCC 
    CTGCCCAGTN CTACTNTAGC CCTTGGTGAT NGCTCNNGCC TAATGCTTAN 
    TTNATACACN TNCCACTTGN NTNATTCTTC TCTGN

AT5G66080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR