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54-1137-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17678329 [Map]; Strand: c
      • AT2G42460.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon4 (CDS)
      • AT2G42460.2 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-1137-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGTCTTGATA AGGCCGAGGA GAATCTTCAG GTATACTGTC TTCACCGCTT 
    TGCTTGTTGG TTTGATATCA TCCGCAAATT TTGGGTACTT AGCGAATATC 
    GGGCTCACCG AAGCAATCTG CCAGCAACAA GAAATATATA ATTATGTGAA 
    CCAAATCCAA ACTCAGGTTG TATCTACTAA AACACATCAG CGATTCTTAA 
    CTTACTTGAG AAGAAAGAAC ATTGAAACCT TTGAAATCTA ACATATCCTT 
    CCTTGTTTCA TCCCCTTCAT GAACAACTTC GGTAACTTTA ATGTAGACTT 
    CAATGAAGAG AGTGTTGTTC TCCAACAACT CTCTATCTTG TAACTTGGTA 
    AGAGGCAACG CCGTTCGAAA ACCCCAGCCA GGGATCTCAG GACCAAACAA 
    GCCATATCTT TCTGCATGCA AGACAATCAA AATATAAATT TTAAGCT

AT2G42460.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G42470.1); Has 882 Blast hits to 581 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 47; Plants - 810; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42460.2

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G42470.1).
Link
InterPro Scan - TAIR