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54-1154-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17903874 [Map]; Strand: c
      • AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon4 (CDS)
      • AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon3 (3UTR)
      • AT4G38170.1 - [+] show detail - FAR1-related sequence 9
        Distance: -684; Region: promoter
    Flanking Genome Sequence: 54-1154-1 - 5-prime edge 
    CNTACTATAT AGGCAGAGAA CGATCAACCA TCTCTTTGTC ATCAAATGTG 
    ACCTTTGACT AGGGGCCTCC ATATTTGTGG AATGACTAGG GGCTTTTTAC 
    CCACCCATAC TTCCGACAAG CAGCTAGACT GCATTGCTGC ATATTCTNTT 
    CTGCAGTTAG GCTAAGCAGA CACTTCTTTT GCTTGTCGGT TGCTGCAATA 
    ATCACAAGCC AATAATGACA CTGACTTATC CAACAACATA TACATCCCAT 
    TTTGATTGCA GTTGAATACC TGAAAACACA GGAACCACTC TATGATNC

AT4G38160.2

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38160.3

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link
InterPro Scan - TAIR

AT4G38170.1

Model type
Protein coding
Short Description
FAR1-related sequence 9
Computational Description
FAR1-related sequence 9 (FRS9); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 1073 Blast hits to 1051 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1067; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR