1. Home
  2. Mutant Lines
  3. 54-1207-1

54-1207-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16175455 [Map]; Strand: c
      • AT3G44605.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-1207-1 - 5-prime edge 
    TCTGGATACC CATGACTGTG GAACTTTGNT NNTCCTCCTT TTGGCTCACG 
    ACTTCCACCG AACCAATCTT TGGCAGCATT TCCTTTGGAT CCATCTCACA 
    CAAACTCTGT GAATCCTGGC CCCGATCTTG TTCCTCACAA CTTTCCACAC 
    CAATCATACC ATCTATACTA ACCTCACTTA CTTTCGTAGC ATCACCTTGA 
    AAAACCTCTT CGCTAACAAA GATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 619105 [Map]; Strand: w
      • AT2G02350.1 - [+] show detail - SKP1 interacting partner 3
        Distance: -14; Region: promoter
    Flanking Genome Sequence: 54-1207-1 - 3-prime edge 
    CTCAGAAGTC AAAATTCTCT CATCAGTTCG ACGGAGACGA TGATACGGCT 
    ACGGACACTG ATTGAGAAAA ATCGAAGCGA AAGCAGAAAA AAGATCGTCT 
    CTTCTACTCT CGATTCGTTG CCTGAGGGAT GCATTTCAAA CATAATCTCT 
    TTCACAAGTC CTGAAGACGC TTGCGTCGCT GCTGCGGTTT CGAAGATC

AT2G02350.1

Model type
Protein coding
Short Description
SKP1 interacting partner 3
Curator Summary
encodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber.
Computational Description
SKP1 interacting partner 3 (SKIP3); BEST Arabidopsis thaliana protein match is: phloem protein 2-B10 (TAIR:AT2G02360.1); Has 311 Blast hits to 302 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 311; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G44605.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.1e-38 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR