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Mutant Lines
54-1236-1

54-1236-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 26439455 [Map]; Strand: c
- AT5G66140.1 - [+] show detail - proteasome alpha subunit D2
  Distance: -691; Region: promoter
- AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
  Distance: 0; Region: intron23 (CDS)

TCTNCGAGGA GTCCGGNTCT TGGGAANNTN CTTCTNCGGC TGGNTCATCC 
NCTCGAGGTA CATACAGGGA NATGTTNTCG AANNGGGATA TACATGACAG 
TAATTGAGTG TTGAGCGTTG CTTACAGGCN GGGAGAAGAC AATGATTACT 
CTAAAATCGC TAAAGTTGAG TTGAAGAAGT TGTTTTCCGG AAAAATGGTA 
AGAAACACAC TTGCTCATCT ACATGTGGAG AGATACTCTA ACATACTAGC 
TAGCTAGGTG GTGAATGAAT CCATACTATT TTTGCAGATC AAAGAAGTGA 
CGGAAATGAG TTTGTCAGCA AATCAAGAGA AAGTAAAGAT GAAGGAGAAG 
ATGAAGTGGA AAGTGGAGGG TGAAGCGGAA CAACCTTCTT CCCCGCTAAG 
AGGCGGACCC GTTGACAAGT CGACTTTAGT AGTAGAGCTT GGTCCCATGG 
AGATTCGTAC ATTTGTGGTT CAGTTTTATC AGAAACAACG TAGAAGAAGA 
AAGTTGTTTG TGGGATGATT GCGCCAATAT GTTTGTACAA TGTTTTAAAT 
CATTCATTCA TCAACGGTTT GGTTAGTTAG AAAGCGCGGG AGGAAGGNTC 
ATGTATTTTT CAATCGACCA TTATACTGTG TTAATGGGCC TGTTATGGAA 
GTTTTGGGTN TATAANGCCC ATTTAAAGGA AATGATGAGT GCG

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 26439569 [Map]; Strand: c
  - AT5G66140.1 - [+] show detail - proteasome alpha subunit D2
    Distance: -805; Region: promoter
  - AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
    Distance: 0; Region: exon23 (CDS)
Flanking Genome Sequence: 54-1236-1 - 3-prime edge
```
CCTCAAGAGT GATGAGAGCA ATGTNTTGAG GCAAGGTGTA GAGATGATCC 
ATGGCATAAC CTTTCACAGT ATTTGAGGCT TTCCATTTCT CCTTGTTCTC 
GTGTGCGAAT GCCATTAGAA GAGGTGAGTA TATTTCCTGT CCAGTCTCTG 
CTACTCCAC
```

AT5G66140.1

Model type: Protein coding
Short Description: proteasome alpha subunit D2
Curator Summary: Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.
Computational Description: proteasome alpha subunit D2 (PAD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, proteasome core complex, alpha-subunit complex, chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit PAD1 (TAIR:AT3G51260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66150.1

Model type: Protein coding
Short Description: Glycosyl hydrolase family 38 protein
Computational Description: Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR