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54-1260-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26437550 [Map]; Strand: w
      • AT5G66140.1 - [+] show detail - proteasome alpha subunit D2
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-1260-1 - 5-prime edge 
    NCTGCGGCCG CCTTTTNAGC ATTCCGATCT CNGCCACGAT CTGCATCAAT 
    TTCAGNTNCT TCTANCTGGC CCTAGCCCAN TTTCCTCCCG TGTCATTACG 
    GCAACCTCAA TGTTCTTTCC GCCACTCTCA ACTACCTGCA ATGCAAAGCC 
    GATATCAAAA CAGCTATGAT CTCAAAGGAC AAAAAATCCT GAAATAACAA 
    AATATCAGCT AGGACGGAGA GGGCACCAAC CTCAAGCAGA GCACGGATAG 
    CGAGTTTAAT AGTTTCTTGG CCAGAGGATT CTTTGTAGTT CTTCTCGAGG 
    AATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26437434 [Map]; Strand: w
      • AT5G66140.1 - [+] show detail - proteasome alpha subunit D2
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 54-1260-1 - 3-prime edge 
    GCCGCAAAAG CAGCGAAGAA AGGCGCTCCA AAGGAAGGTT GATAAAGACA 
    ATNACTGTGN CTGTNNCTCA ATCTGAACTT ACCTTCTTCG CTGCTTCTGT 
    TTCTCAATCT TGTTTTGACT CGAGCCAACT CTTTGGCAAA AGAAGAACCT 
    GACCCCATCG TTTTGTTAAC TTGAAAATGC TCCCAAAAAA AACTGAAGAA 
    AGGGTTTAAA ATTCGCTTGA TCTTGATCAA ACCAAGGATA AATTTGCTGT 
    TGCTCATTGT TAGATAGAGA AGTGACTCTC CATTTTCTAT TTATAAGTNA 
    GCAGAACAAT TAGTGTTCCC

AT5G66140.1

Model type
Protein coding
Short Description
proteasome alpha subunit D2
Curator Summary
Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.
Computational Description
proteasome alpha subunit D2 (PAD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, proteasome core complex, alpha-subunit complex, chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit PAD1 (TAIR:AT3G51260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR