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54-1342-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26440193 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: intron20 (CDS)
    Flanking Genome Sequence: 54-1342-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GGTAAACTAT TTGATGTCCA GCAGAAATTG CAAAACCAAG AAAAATTTGG 
    ACTATATCGA TTGTGAATGG CTTTACAGTT CTAACGCATT GTTAGTGTAT 
    TTTTTCAGCT TAATCTTGGA ATGTACATAA AAGACGAGAA AGCAGAGTTG 
    TCGGTGTTGG TTGATCGGGC TACTGGGGGT GCAAGTATTA AGGACGGTGA 
    AATAGAGTTG ATGCTTCACA GGTTCCAAAT TTCATTAGTG TCATTAGTCT 
    GTATTTTTAA AACATGAAAC ATTATTGTGT AGTTGACACN TGATGAAACA 
    TCCATGGGAA CAGGAGAACG TCCATGGATG ACTCGAGAGG AGTGGAGGAG 
    AGCCTTGTAG AAACTGTGTG TGTGAATGAC ACCTGCGCAG GATTGACGGT 
    ATGAATGATT AATTGAGAAA TTGTGTGTGT TTTGTCCAGG ACAAAACTTG 
    ATACATACTT GTGTAAATGC AGATTCGTGG GAATTACTAT GTAAGCATAA 
    ATAAGGTANG AGAAGGTGGG CGGTGGAGAC GAGAGACTGG ACAGGAAATA 
    TACTCACCTC TTCTAATGGC ATTCCGCACA CGAGAACAAG GAGAAATGGA 
    AAGCCTCAAA TACTGTGAAA GGTTNTGCCA TGGATCATCT NTACACCCTT 
    GCCTCAAAAC ATTGCTCTNA TCACTCNTTG AGGAGTTGGA TTTCGGGAAC 
    GTCCTTCTTC GNCCTGGCTC ATCTCTAC

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR