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54-1389-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3224954 [Map]; Strand: w
      • AT5G10270.1 - [+] show detail - cyclin-dependent kinase C;1
        Distance: -189; Region: promoter
    Flanking Genome Sequence: 54-1389-1 - 5-prime edge 
    ATCATCCGTT AAATTTAAAT AAATTNATGA AAGANATATC AAATATCATT 
    TTTATTGACC GGTTTTCAAA AATACCACAA CAAAAATAAT CTTTTCAAAA 
    GTATTTATTA AAATACAAAC TCCATTTTTT AAAAATTGGA ATTATGGGAT 
    TATGTTTCTT ATATATCTTT CTCATCATAA AAGACTTGAC AACAAAATTG 
    TTTAACATGC CAATGCCAAG CACACTCACA AGTCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3224802 [Map]; Strand: w
      • AT5G10270.1 - [+] show detail - cyclin-dependent kinase C;1
        Distance: -37; Region: promoter
    Flanking Genome Sequence: 54-1389-1 - 3-prime edge 
    GGTTNGACCG GTTCNAACCG GACGATGCGN NAATTTAAAN CGGGACGCTG 
    NATACANANA TAAGCTGGGA AGCCTNCGGA GAGAGAGTTG TCTGAGAGAG 
    GGGGAAAGCG ANCGANAAAG ACGTNATTTG ATCGTCGGAG TAAAAGATAT 
    TGTTCGACAG TGGGACTCCC GGGAACGAAG ATGGCGATGG CATCATTCGG 
    GCAGCTAAAT CTCGAGGAAC CTCCTCCAAT CTGGGGATCT CGCAGCGTTG 
    ATTGCTTTGA GAAGCTCGAA CAAATTGGTG AAGGCACTTA CGGGTTATTC 
    ACTTTCTCTT TAATTCAATT T

AT5G10270.1

Model type
Protein coding
Short Description
cyclin-dependent kinase C;1
Curator Summary
Encodes CDKC;1, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development.
Computational Description
cyclin-dependent kinase C;1 (CDKC;1); FUNCTIONS IN: kinase activity; INVOLVED IN: response to virus, leaf development; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin dependent kinase group C2 (TAIR:AT5G64960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR