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54-1549-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5934047 [Map]; Strand: c
      • AT3G17350.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -17; Region: promoter
    Flanking Genome Sequence: 54-1549-1 - 5-prime edge 
    TTCGTCATTG TTGTTTTTCT TTATCTCTTC CTGTAAATCT CTCTTTCCCT 
    TTCTATCTCT AATGGGTTTA TGGAAATTTA AATTTTAAAT TAAATTAAAC 
    CTCGTTATGG TATTATTTGT TAATTTATTA TCCTAAACAT AGTTTTATGT 
    ATGCATAAAT ATGGAATATT ATCTTGAAAT TTTTTTTTCT TCTACTTTCC 
    TTTGATTTGT GATGTATTTT TTAAGTGATT TTTTTCCTTT AATTTATTTG 
    TCAAATAGTC AAAAACATCT TTTTCTGTTA ATAGAAAAAT AATACATGTT 
    ATTATGCCCC ACACATTATT GGATACGTTC TAGTGGATTT TATGATATCT 
    ATTACATCAT ATATATACAT TTGTCTACTA ATTCATCAAT CTGTTTTTTA 
    TTCATCAACA TATTTCATTT ATATAGACAA ATCTAAAGTA GATACAACTA 
    TTAAATATTA GAGGGTAGAA CAAACATTCT CTAAAAGAGA GAGTAAGAAA 
    CCTAAAAACT ATAAGAAAAA GTCCTCACAT CATTATCTTC ATTGTATGAT 
    CAATTCGTTT AAACTTTAAA ACCGTATTGT ATTTGGTTGA TCGATATTTA 
    NAATCTTCTA NAAGAGTGAT GAATTTTTCG ATCGGAACAA ATTGAAAAGT 
    GAAAACGAGT GAAACCACAT ACTAATTTCA TGTTTCCACC TATTTTAGCA 
    A

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5934119 [Map]; Strand: c
      • AT3G17350.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1549-1 - 3-prime edge 
    ANTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCG 
    CTCTTCTTCT TCTTCTTCTT CTCCTTCCTC TACACAATCN CAACCCTAAC 
    ATTTCCGCCA TTAACAACCT CAGCAGCAAC ATCATGCCGA ACATTATGCG 
    GCAACATCCC AATAAACTAC CCGTTCGGCA TCGACGGCGG TTGCGGATCT 
    CCTCAATACA GAGGAATGTT CAATTGCTCC ACCGATCNAT ATTTCACCAC 
    TCCTTCCGGC AGCTATAAGG TCCAAAGCAT CGATTACGAG AAGAAAACAA 
    TGGTAATCTT CGATCCTGCT ATGTCTACTT GCTCGATTCT TCAGCCTCAC 
    CACGATTTCA AAATGGCGGA TATTCAAAAC ACTCTTATTA GACCTTCGTA 
    CGACACCGTT TTCGCACTTT TCAACTGTTC CAACGATTCT CCTGTTCATA 
    ATCGTTACCG GAATCTATGT TTTAATGCCG CGGGCCACTC TTGCGACGAG 
    CTTTATAGCT CCTGTACTTC CTTTCNAATC TTCAACACCA CTTCTNCCTA 
    TNGNATGAAT CGCTNAGNTG AACCAATTNN ANTTNAAAAT NTNNGNNAAA 
    ATTTTNNNNT TTTCCCCCNA ANTTTNAAAN TNNNGGTTTC CNGGNANNAA 
    CAGNNNNGGG NNATACAANN CCNNNTGGNN GNTNNACNNA CTNCNANNCG 
    GNNNGGGGGA NNNNNNNAAA NNTTNNGGAT NGNNNNCNTT NCNCNNNNG

AT3G17350.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50290.1); Has 203 Blast hits to 203 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR