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54-1612-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1844114 [Map]; Strand: c
      • AT3G06105.1 - [+] show detail - pre-tRNA
        Distance: -720; Region: promoter
      • AT3G06110.3 - [+] show detail - MAPK phosphatase 2
        Distance: 0; Region: intron3 (CDS)
      • AT3G06110.1 - [+] show detail - MAPK phosphatase 2
        Distance: 0; Region: intron3 (CDS)
      • AT3G06110.2 - [+] show detail - MAPK phosphatase 2
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 54-1612-1 - 5-prime edge
    CTCAGTTGGC AATTTATATA CACTTTTTTG ATATGGTTAC ATAATTTGCA 
    ATTGGTTCAC ATTGATGATT CTTAAACACT AAATCTAATA ACTGAATGTA
    TGAGATTTAA GGGCAAAAGA ATCAAAACCT CCTAGACATT CCCATGAAGC
    AATGAACCAA AACACCACCA CCAGATTGAA TAGCTTGGTC GATGAAGCTA
    TAACACTCAT CGAAATATAC TTGTCAAATC GGTCTCGGAT CTATCAACCA
    CTTCACGATG AAGAACAAGT TTATAAAATC TCTAAACGAA AAATTTCAAA
    AACAGGCTAA GGATTGAAGA AAAAAAACCC AACCTTCAAT GACTTTGTAG
    ACAAAATCAT CAGGATAAGG AGGAGCCAAG GCCACAGCAA CGGTTAAGAC
    ATGAGTGATA TTAGAGCTTT TGAGAAAATC CTTGTTATTC GCTTCAGCTA
    CTGATCCTAT GAACAATCCC TGAGAATAAA CTCATCCAAC AAACGATTTT
    TCGGAATTAA AGACTCCAAA ACCTGAGAAA TTCCAAGTGT GAAATTAGAC
    GGATAGATAG AGAAGAGAAA CGAAGAAAAC CTGTTGGATC TCGCTGAGAT
    CTTTGCCTCC TTCGAGTAGC TTCTGGGAAT TAGCTTCTCC GACTCCGAAG
    AGATCAACCA CTTTCTCCAT CGCTCTCTGC T
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1844230 [Map]; Strand: c
      • AT3G06105.1 - [+] show detail - pre-tRNA
        Distance: -836; Region: promoter
      • AT3G06110.3 - [+] show detail - MAPK phosphatase 2
        Distance: 0; Region: intron3 (CDS)
      • AT3G06110.1 - [+] show detail - MAPK phosphatase 2
        Distance: 0; Region: intron3 (CDS)
      • AT3G06110.2 - [+] show detail - MAPK phosphatase 2
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 54-1612-1 - 3-prime edge
    CAACTGAGTA ACCATAGGAA ACTACAGAGA CTCAGATTGG CAAAAGTGTA 
    TATGAATCTT GTAGTTTGCT TTGATTCTTT TATAGCTTGC TGATTCTGGT
    ATTAGTAGGA GTTATGGTAG TGAACAGATT ACATCTTGTT GTGGACAAAT
    TAAGAGTTTT TCTTGAACCT GTAATTTGCT TATTGTGTCG TTCTGTTATA
    TATATACTTA CACAATTTGA TTGGTTTGAG TTTTTCTTTG AAGTGTGACT
    ATAGTGGTGG CTTACCTGAT GAAAAAGCAT GGAATGGGAT TCTCTAAAGC
    TATGGAACTT GTAAGGAGCC GACGACATCA GGCATATCCT AATCCCGGTT
    TCATTTCGCA GCTCCAGCAA TTTGAAAAAT CCATCCAAGG TAATGCATGA
    TTGCTTCAGC TGATAAGAAG ATTCAAGATA GTGGCATGAT GAACTCTCAT
    GAAATTCCGG CAAGTGTCTT CAGCCCCATG TTGGCCAAAA AAGTTGATTG
    GTTTCGTGCT GTGAAGGATT TTTTCTTGTG AACTATTGAT GGTGAGCACT
    TTGCCATGTC CATTAGCCAA TTGAAATTAA TGAAAACGCA GAATTTACAT
    TTCCTCTGTT ACTACAATGA ATATATTTTC TAGGAGGATC AGTGTGAATT
    TAACCAAACC AATCCCATAC CCAAACCAGA CTGAAAATTG GTTGGTT

AT3G06105.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Gly (anticodon: GCC)
Link
InterPro Scan - TAIR

AT3G06110.1

Model type
Protein coding
Short Description
MAPK phosphatase 2
Curator Summary
Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.
Computational Description
MAPK phosphatase 2 (MKP2); FUNCTIONS IN: MAP kinase phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: intracellular protein kinase cascade, response to ozone, negative regulation of MAP kinase activity, response to stress; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase 1 (TAIR:AT3G23610.2); Has 4028 Blast hits to 4023 proteins in 348 species: Archae - 21; Bacteria - 87; Metazoa - 2101; Fungi - 442; Plants - 308; Viruses - 204; Other Eukaryotes - 865 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06110.2

Model type
Protein coding
Short Description
MAPK phosphatase 2
Curator Summary
Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.
Computational Description
MAPK phosphatase 2 (MKP2); FUNCTIONS IN: MAP kinase phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: intracellular protein kinase cascade, response to ozone, negative regulation of MAP kinase activity, response to stress; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase 1 (TAIR:AT3G23610.2); Has 4168 Blast hits to 4160 proteins in 377 species: Archae - 19; Bacteria - 125; Metazoa - 2129; Fungi - 477; Plants - 302; Viruses - 229; Other Eukaryotes - 887 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06110.3

Model type
Protein coding
Short Description
MAPK phosphatase 2
Curator Summary
Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.
Computational Description
MAPK phosphatase 2 (MKP2); CONTAINS InterPro DOMAIN/s: Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase 1 (TAIR:AT3G23610.2).
Link
InterPro Scan - TAIR