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54-1658-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11270090 [Map]; Strand: w
      • AT2G26500.1 - [+] show detail - cytochrome b6f complex subunit (petM), putative
        Distance: 0; Region: exon1 (5UTR)
      • AT2G26500.3 - [+] show detail - cytochrome b6f complex subunit (petM), putative
        Distance: -46; Region: promoter
      • AT2G26500.2 - [+] show detail - cytochrome b6f complex subunit (petM), putative
        Distance: -128; Region: promoter
    Flanking Genome Sequence: 54-1658-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAAA CGTGTGTTCA GAGATATTTG ATAAAAAGAA 
    GTAAATCCAT CTCTGGCCGT AATTGGCTGT GGCAGCCACA CCCTCCTTAT 
    CCAAAATCTC CTCCTTCCTT AAAAACAATC TTCTCTTCTT TTGCTTCTCC 
    TTTCTTTGAG TCGCTTCACT TCTCTTGCAT CCTTCAAACT CATCCACAGG 
    TAATAATATT AATCAACCAA TCAATAATCT CTCTTCCAAC TTCTCTTCCG 
    ATCATAACCA TTTCTTGAAT CTGTGAATCT TGTTTTCTTT TTCAGCAAGG 
    AATGGCGACA GCAGCAGCAC CAGCAGTGAT TTCATGGACA AGATCAGGCA 
    TTGTGTCCAA ATCCGGACAA ACCCAGAAGA AATCTGAGAT GAAAGTTTCT 
    TACATAACTG GACTTAACTC ATATGGTGGT CTCAAGGCAC AGAACAACAA 
    GGTTGTCTCA ATGGGATCAC CACTCTGCAC AGAACAGTGT TTTGCTAACG 
    TTGTGATGTC TCTCAAAGGA AGAAGAGGTA ATGGAGGAGC CTTATCCACC 
    CACGTGTAAC GCTGTCGGAG AGATTTTCAA GATTGCAGCA ATCATGAACG 
    CTCTTACTCT TGGTTGGTGT TGCAGTTGGA TTCGTTCTTC TTCGAATCGA 
    AACTTCTGTT GAAGAAGCTG AAGCAGAGTA AATAGAGTAA ATTGCTGCTC 
    TTATAATTAT ATATTTTTGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11270083 [Map]; Strand: w
      • AT2G26500.1 - [+] show detail - cytochrome b6f complex subunit (petM), putative
        Distance: -6; Region: promoter
      • AT2G26500.3 - [+] show detail - cytochrome b6f complex subunit (petM), putative
        Distance: -53; Region: promoter
      • AT2G26500.2 - [+] show detail - cytochrome b6f complex subunit (petM), putative
        Distance: -135; Region: promoter
    Flanking Genome Sequence: 54-1658-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    CTCATCGCTT TACTCAATTT CTATTCTTTT TTTTTTCTAA ATAAATTATG 
    AGAGAAAATT ATTAATAATT ATCTANGTTA NCATATATAT ATATAATTGG 
    TTATANGTTA TATATATAGN CATANGAATA TGAATCATTT TAATTTTAAT 
    TNAANGGGCA TTCGNCANGT AAATNTTAAA AAAAAAAAAA GGGGGTTTTN 
    GGGNCCCNCT AANTTTNNNA NTNNCCCTTA AAAANNCCCG GGANNNNAAA 
    AAANNNCCCG NANCCAAATT TTTTTTTAAA ANTTNCCCCA ANTTTTTTTT 
    TTTNGNAAAA AANNNNCCNG GGGGGNTTTT TGGTTTNGGA NTNNCCCCCN 
    GAAAAATTTG NAAAAANCCC CTTNNNAANG GNGGNNCCCC CTTTTNAGGT 
    TCCCNNNAAA NTNNTTTTTT NNNANNTNGG AANNNNNCCC GGGTTTNNNN 
    CCCAAATTTN AAAAAATTCC CCCCCCCCNT TTTNNAAAAA AAAAAAAAAA 
    AAAAATTTNN NNNANCCCCC CCCCCTTTNG GNNNNNCCNG GGNNAAAANC 
    GNNATTTTTT TTTTTTTTTT TTCCCNTCNA ATTTTNCCCC CNNCCAANGG 
    ANTTTTNCNC CCCCCGGGGG NTTTTGGGGG GCCAAANCCN AACCCCTGAA 
    NNGGGGGNTC NGNGGGNGGN NNGCCCCCCC CCGGGGGGGA AAAAAAACCC 
    GCCCCCAANC AGGGNGGGNC A

AT2G26500.1

Model type
Protein coding
Short Description
cytochrome b6f complex subunit (petM), putative
Computational Description
cytochrome b6f complex subunit (petM), putative; FUNCTIONS IN: plastoquinol-plastocyanin reductase activity; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PetM of cytochrome b6/f complex subunit 7 (InterPro:IPR012595); Has 54 Blast hits to 54 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G26500.2

Model type
Protein coding
Short Description
cytochrome b6f complex subunit (petM), putative
Computational Description
cytochrome b6f complex subunit (petM), putative; FUNCTIONS IN: plastoquinol-plastocyanin reductase activity; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PetM of cytochrome b6/f complex subunit 7 (InterPro:IPR012595); Has 54 Blast hits to 54 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G26500.3

Model type
Protein coding
Short Description
cytochrome b6f complex subunit (petM), putative
Computational Description
cytochrome b6f complex subunit (petM), putative; Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR