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54-1863-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22102523 [Map]; Strand: w
      • AT1G60020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-1863-1 - 5-prime edge
    AAGACGATGG GGAGCTAGGT GGTGTGTTAT TGGGCTGGTT TGAGTGTGAT 
    GGGCTGGAAG TGTTTTCAGA TGGGCTTTTT GAGTTGGTGT TTGGCGGAAT
    TGGGCCTTGT GGAGATGAAA CTGAATTTGG GCCAGAGCCC ATTTGAGAGT
    CATCTTCATG AAGCGTCGTG TTTGAGTCTC GATTGGTCGA GAGTTGTGGC
    GACGATGTCG GGACAGGCGG TGGTGGCGGA GAAGGCGACG GTGATCGCGG
    CGAGAGTGGC AGCGCTGGCG ACTGAGACAG CGGTTGGTGA GGATCTCGTG
    TTGGGGGTGG TAATGACGGA AGCTGTACGA ACGGCGGCGA TGGGACTGTT
    GTGGTTATGG ATTGTTGGTT GGATTCATTG GTGTTTGTGA GTGGGTCGGA
    TAAGTGATTG GCAAATGGAT AGGTGGACTC AACAAATTGG ACATGTCGAG
    ATGTATAGAC ACGACCGGTG GTTCGGTTCA AGCAAAGATA GGCGCTTTGG
    GTTTGTGAGT AGCCGAGAAA CACACACGGA GCAGATCGAT CATCAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22102416 [Map]; Strand: w
      • AT1G60020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-1863-1 - 3-prime edge
    ATCGTCTTCT TCTTCCGTCC CGACTCCAAT TCCCTCTCCA TCACCACAGT 
    CATCAAATTC CCCACCCCCA CCCATACAAA ATCAACATTC CATGCGAACC
    CGAGCCAAAA ACAACATATC CAAACCAATA AAAAAACTAA CCCTAGCCGC
    CTCTCTCAAA GCTAAATCCA AAATTCCATC CACAGTGGCT GAAGCTCTTC
    GTGATCCAAA CTGGCGAAAC GCGATGTCAG AGGAATTTAA TGCGGTTCTC
    CGGAATGGCA CCTATGAGCT GGTCCCGCCA GAACCACACC AAAATGTTGT
    TGGTACTCGT TGGATTTTTA CAATCAAATA TAACCCTGAT GGCTCTATTG
    ACAGGTACAA AGCACGGTTT GTTGCCAAGG GGTTTCATCA ACAACACGGC
    TTTGACTACT CAGACACATT CAGTCCCGTC GTTAAATCCA CCACAGTTCG
    AACTGTTTTC GACATTGCGG TCAGTTGCTC TTGGGATATA CGACAGCTCG
    ATATCAACAA CGCTTTTTTG CAAGGCCGCC TAACAGAGGA TGTTTACGTT
    GCACAACCAC CAGGCTTTAT AGATCCGGAC AGACCCAATT ATTGTGTGTC
    ACCTCAAGAA GGCGCTATAT GGACTCAAAC AAGCTCCACG CGCTTGGTAC
    CAAGAATTGC GTGGGTTCCT TCTCACATGT GGCTTCACAA ACTCCGTAGC
    TGACACTTC

AT1G60020.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa)
Link
InterPro Scan - TAIR