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54-1884-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26973362 [Map]; Strand: c
      • AT5G67640.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -2721; Region: intergenic
    Flanking Genome Sequence: 54-1884-1 - 5-prime edge 
    CTCTGGTGTG ATGAAGACGT CAAAGACGCA TATTTCATCA GGGAATCAAG 
    AAGTGGAATC ACATATTAAC CATGAACTAG TCATCAACAA TCTTGACGAA 
    NCAGNCGNGG CCGTCTACCN CNCCGTGCGA TATATACAAT TATTCTATTT 
    CTCTTGCAAA TCGTCAATGG AATGTCAATG ACGAACCTCC AGATCGTGGT 
    CGAAGTGAGA TTTTGGTTTT TGACGGTAAG GTTGANNTGT GCANCAAGCT 
    CTATGGTACT CTGGNTTCTT ATNTCTNTNA TGAGAAAACT CATTGTTATG 
    ATGATTCTTA CNANGAAGAC AAAGAGATAA TTGAAGTTAA ATTGCTTGAG 
    AAATCAAAAA TNCTTGTNCC TTTTCATNNT TGGNGNTTGA TAANAGAAGA 
    TGGNNNTGTG ANCANATNAN CANTTNNNGG GNGTNNACCA CNCGNNCCNN 
    NNNGCNNNNN NAAAANAGGG GNGNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24680054 [Map]; Strand: c
      • AT1G66230.1 - [+] show detail - myb domain protein 20
        Distance: 1639; Region: intergenic
      • AT1G66235.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 2952; Region: intergenic
    Flanking Genome Sequence: 54-1884-1 - 3-prime edge 
    CACCAGAGCA AAGACATCGG AAACGAAATC TATGGGTTTG ATATTATCAA 
    TCGGCATGTT AACTTTGACA TCATATATTA AATCCCCATT GGAGAGGGAC 
    TCCGATGTAG ATAAATTAAT ATCAAGCTTA ATAAGATCAA GAAAGTACTC 
    TCAACCATAA ATGGTTTTAT TTTATTTTAA TACAAACTAA TGCTTTTTAA 
    TTTTAGGTAA GAGGATTTTG ATTTATACAT AAAAGTTATA TTTTAAAACA 
    TCACTTAAGC AAAACAATAG CTGTGAATTA TTTATTAAGC T

AT1G66230.1

Model type
Protein coding
Short Description
myb domain protein 20
Curator Summary
Encodes a putative transcription factor (MYB20).
Computational Description
myb domain protein 20 (MYB20); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 43 (TAIR:AT5G16600.1); Has 8410 Blast hits to 7811 proteins in 453 species: Archae - 0; Bacteria - 0; Metazoa - 663; Fungi - 296; Plants - 5767; Viruses - 4; Other Eukaryotes - 1680 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G66235.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24380.1); Has 283 Blast hits to 282 proteins in 34 species: Archae - 0; Bacteria - 19; Metazoa - 15; Fungi - 0; Plants - 234; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67640.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR