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54-1930-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26426145 [Map]; Strand: w
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -739; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-1930-1 - 5-prime edge 
    GTTGGGTACA GTCGCATTTC CAGTTTGAAT TTTAATATAG TTTGGGACAA 
    CGAAGAGGGG AGTGATTCAA ATTAGCACAA TCGTAATGAG TAGTTGTTGA 
    TATGGTTAGT TTGTTGATGA GCCAACAATG ATTAGTTTGT GGTTAGCTTA 
    GGTCGAGTAA AGGCGCAGGC AAAAGAAGCA GAAGCTAGTC CAAGTCCAGT 
    GGGAGTGGGA GACGCATTCA GTAATGTGAA GCATCTTCTC CTGCCGGTGA 
    TTGATCGGAA TCCTTATCTT TCTGAAGGCA CCAGACAGGT TATTGTTTAG 
    CTTGTTATCT TTTTGAGAAC ATGTTGACAC CAAACAAAAA AGCTGATTAC 
    ACTTAATTTG ATAGGCTGCT GCTACAACAA CCAGCTTGGC AAAGAAGTAT 
    GGAGCTGATA TCACAGTTGT AGGTAAGAAC AATTAGTGTT GCATTAATAT 
    CCCCTTATGT ATCATATGAA TTATATAGCC GTGTTGATCA TCTGTGACCA 
    CCGTTGTTGA TTCAGTCATT GACGAAGAAA AGAGAGAATC ATCTTCGGAG 
    CATGAGACTC AAGTATCCAA CATCCGGTGG CATTTGTCTG AAGGTAAAAT 
    TGAGGAATTA CTTGTAGGAA ATTGTANGTA AACTATAGTG TTGGAATCCC 
    TTATTGAAGA AAGGTTAACT ATAATGTGGT GGTTGCANGT GGGTTCGANG 
    AGTTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26426029 [Map]; Strand: w
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -623; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-1930-1 - 3-prime edge 
    TACCCAACAA AGGTAGAATT GGACTATTAC GTTTAGGAGA AGCAACTCGT 
    ATTCCAAATA AACAGAGAAA AAGAAGAGAA GATACCTTTG AGAGCGACAC 
    TGCGTAGGGA GAGAAGCTGC TGGCGAGGTT TAGATCGAAG AGAAGAAAGA 
    GGGTAGAGCG CAGAGGAAGA AGAAGAAGAA GAAGGAAGTG TTGCTTGCTT 
    GGAGGCCGCA TCGAGAACAG AAACGGCGGC TATGGAGTGA GCAGATGCCA 
    TTGAAGTTGC GACGGAGTTC AGCAACTATC GCGACGATTC CAGAAAACAA 
    TTCCAGAAAA CAAACTTTTT TTTTGTTCTC TTATTTTGGT TCTGCCCACG 
    GCTTGGACTA NAGTATCGGT GAGGGGCTTG AATT

AT5G66080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR