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54-1945-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26426146 [Map]; Strand: w
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -740; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-1945-1 - 5-prime edge 
    GATAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CCTCAGGGGA GTGATTCAAA TTAGCACAAT CGTAATGAGT AGTTGTTGAT 
    ATGGTTAGTT TGTTGATGAG CCAACAATGA TTAGTTTGTG GTTAGCTTAG 
    GTCGAGTAAA GGCGCAGGCA AAAGAAGCAG AAGCTAGTCC AAGTCCAGTG 
    GGAGTGGGAG ACGCATTCAG TAATGTGAAG CATCTTCTCC TGCCGGTGAT 
    TGATCGGAAT CCTTATCTTT CTGAAGGCAC CAGACAGGTT ATTGTTTAGC 
    TTGTTATCTT TTTGAGAACA TGTTGACACC AAACAAAAAA GCTGATTACA 
    CTTAATTTGA TAGGCTGCTG CTACAACAAC CAGCTTGGCA AAGAAGTATG 
    GAGCTGATAT CACAGTTGTA GGTAAGAACA ATTAGTGTTG CATTAATATC 
    CCCTTATGTA TCATATGAAT TATATAGCCG TGTTGATCAT CTGTGACCAC 
    CGTTGTTGAT TCAGTCATTG ACGAAGAAAA GAGAGAATCA TCTTCGGAGC 
    ATGAGACTCA AGTATCCAAC ATCCGGTGGC ATTTGTCTGA AGGTAAAATT 
    GAGGAATTAC TTGTAGGAAA TTGTAGGTAA ACTATAGTGT TGGAATCCCT 
    TATTGAAGAA AGGTTAACTA TAATGTGGTG GTTGCANGTG GGTTCGAGGA 
    GTTCAAGCTG TTGGAGANGC TTGGGGAAGG GAAAAAGCGA CNGCCATAAT 
    AGGAGAGGTG GCAGATGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25512840 [Map]; Strand: c
      • AT5G63740.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -1384; Region: intergenic
      • AT5G63750.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 154; Region: intergenic
    Flanking Genome Sequence: 54-1945-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
    TGAAAGATTG TCTATATTCT ATGAGAAAGT TTCAACGAGT TATGTATGCA 
    AGGGATAATG CCAAACTAGA TGAAGTAAAA AAGATATTAT TTGAGACGAA 
    TTCCAAATCG CAGTACCTTT GAATTATTAG AATATCTCTG AATTTATTTA 
    AAAACCCCAC CAAAACAATT AAAATTCTTA ATCCATTAGA GCTCCCTTAG 
    TTAATTAAGA GACATATCAC TTAGATCCAC ACGAGCTGCA ATATCATCAC 
    TGCACATCAA ACACTCTTTA TGGAACCAAG CGNGGCCNTA TGTGCAGCGA 
    TCACAGAGCC AAAAAAGACC ACCATAGTCG TCGTAGGACT TCACCTTCAC 
    GTCATCCAAA CCTTCTTGTA AAGTCTTGAT GAAATGATAA AAGTNGTTCC 
    CANTGTTGCT TGTCTCAATG GTTACCTTAT GCTTGACNCA NCNNANATTT 
    TNATNAGNNN CTGACNATGC TCTNNCTATC TNCNNNTNNA NAGNNTTTGA 
    NAAACTNTNC NCNNNNGANG NCNCNNNNGN NNGNNGGANN NNNNNGNNCT

AT5G63740.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G63750.1); Has 179119 Blast hits to 41759 proteins in 2045 species: Archae - 1298; Bacteria - 52257; Metazoa - 41414; Fungi - 23882; Plants - 9817; Viruses - 3088; Other Eukaryotes - 47363 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63750.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
ARIADNE 13 (ARI13); FUNCTIONS IN: zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT5G63730.1); Has 1670 Blast hits to 1662 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 716; Fungi - 141; Plants - 537; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR