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54-1991-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4300369 [Map]; Strand: c
      • AT1G12630.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 894; Region: intergenic
      • AT1G12640.1 - [+] show detail - MBOAT (membrane bound O-acyl transferase) family protein
        Distance: 2943; Region: intergenic
    Flanking Genome Sequence: 54-1991-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATGTT 
    CATATACATA TATGGCACAA CCTTTACAAC AAAAAACATA TCCAGAAAAG 
    GAAACTCAGG ACATCAAAAC TTTTTAAAAG GAACACTAGA TGAATATAAT 
    ATATATATAT ATATATTGGN GGGTAAATAA GCATCAATCA ATCGANTGAT 
    TCATATGAAN ACATATATCA CTACANACGA ATTAAGTGGA ATATANACCG 
    NTGGATGGAT TTCCGAATAT TTATCATAGC NACGAACATG TGACGAAACG 
    AAATAGAGAT AGATATGCCG TGTNTGTAGA ANACAACGCT TTATAATAAA 
    GANTGATAGA TATAAAGTCA AAAAGACTCA AAACAATTGA TCATGGGTCT 
    CATCGAAAAA GAGAAATTCC ACAAAGATTT TTTTTTGAAA TNCCACNAAN 
    AANANAANTN CCACAAAGAN AAATNGNCAC AAAGATCATA TNACTCATCA 
    TATTTATGGG NCCTTCANTN GACAAACATN AAACTTTGCC NAATNAAAAN 
    NGCGGNGTTN TTTATAAAAA NCCCCGTTTT TATATGTGTN AAANACTTTT 
    TTTAGTTCAT GTACAACGAG CTAGNAGCTA TTTATCTCAT CTTAGTGNGG 
    AACATAANAA CTGCNTGAAC CTTATTCTTA ACTAAGAGGG GGCAAAATAT 
    AAATTTTCGA AGAGTTNTAA TATAAATCAN CNCNTGAGGT CGCGAAACTN 
    TGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4300629 [Map]; Strand: c
      • AT1G12630.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 1154; Region: intergenic
      • AT1G12640.1 - [+] show detail - MBOAT (membrane bound O-acyl transferase) family protein
        Distance: 2683; Region: intergenic
    Flanking Genome Sequence: 54-1991-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGT 
    TTTCTTACTT GGTCATTTTT TGTCGTTTTC TTTAGTAAAA AAAAGAATGT 
    ATGTCTCATC TCCTTATTTT TGACACTATC TTACTAATAA GTGATATATT 
    TTGCATTAAA ATCTTAGTCT TTATATACTT TATCTGTTTT ACAATTATAT 
    GTCATATTGA TAAATTTCAT TCGAAATTAA ATCGTGAAAC ATTTCATTAT 
    ATATTCACAA CAAATAAAAT CTAGCTAATT CAAGATTATT TGTATAAAAA 
    ATCTAAGCCA AGATTTAACG CAAAAAAAAA TTANCACAAG AAATTACCAA 
    AAAATTTTAC CTGAAACGGA CAAAGACAGT TTAATGGGAG AGGNGACCAT 
    GTGGCTTTTC TTTAATCATA TCCGTCACTA AGTTCTATAN AGCTTGCTTT 
    AGCTTTACAA CTTTTTAATA TTCTATCTAA AAAAAATCAT GCAATATAGT 
    AGTATTATTA TGAAATTTTA ATGGGTTTAT ATTCTTCANA AATGGCAAAG 
    GCATTGGTCA NATCAAANAA ATTTGCCTTT TGTTTTAAAT CATTCAAAAA 
    GAAATTACTA AAATTAACTC GGCTTGTCTN TTCCGACTAA ACATCTGCAC 
    TATTTTTTCT TTACAAAAAC TTCGATTTCC ACACTCTTTA CCACGTGTCA 
    CTATCTCATC GGATTTCTTT GACCTAAATC CCTTTTTTGG TTTGTTTTAT 
    ACACCTA

AT1G12630.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G52020.1); Has 5560 Blast hits to 5541 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 5552; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12640.1

Model type
Protein coding
Short Description
MBOAT (membrane bound O-acyl transferase) family protein
Computational Description
MBOAT (membrane bound O-acyl transferase) family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); BEST Arabidopsis thaliana protein match is: MBOAT (membrane bound O-acyl transferase) family protein (TAIR:AT1G63050.1); Has 1204 Blast hits to 1199 proteins in 313 species: Archae - 0; Bacteria - 269; Metazoa - 625; Fungi - 142; Plants - 47; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).
Link
InterPro Scan - TAIR