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54-1997-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26439164 [Map]; Strand: c
      • AT5G66140.1 - [+] show detail - proteasome alpha subunit D2
        Distance: -400; Region: promoter
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon25 (CDS)
    Flanking Genome Sequence: 54-1997-2 - 5-prime edge 
    NGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTA CTGGAGGGTG AAGCGGAACA ACCTTCTTCC 
    CCGCTAAGAG GCGGACCCGT TGACAAGTCG ACTTTAGTAG TAGAGCTTGG 
    TCCCATGGAG ATTCGTACAT TTGTGGTTCA GTTTTATCAG AAACAACNGT 
    AGAAGAAGAA AGTTGTTTGT GGGATGATTG CGCCAATATG TTTGTACAAT 
    GTTTTAAATC ATTCATTCAT CAACGGTTTG GTTAGTTAGA AAGCGCGGGA 
    GGAAGGTTCA TGTATTTTTC AATCGACCAT TATACTGTGT TAATGGGCCT 
    GTTATGGAAG TTTTGGGTAT ATAAGGCCCA TTTAAAGGAA ATGATGAGTG 
    CGCGATTTGT CTCTCTTCTC AAAAACTTGA AGATCTGAGT AGAGTACTTC 
    CTTCTTCTTT TTTTTTTTTT TTTTTTTGGG NCNGGGGGNG GCCNAAAAAN 
    GGGGNNTNCN TTTTTTNNNN NTTNCCCCAA AAANNAAAAN NAAAANAAAA 
    ANNGGGNAAA AAANNGGGTT NANANNAAAA NNNNNTTTTT NTTTTTTNCC 
    CCNNGGGGNN CCTTTTTNAA AAAAAAAACC CCCNTNAANC CCCCCCNANG 
    GGNAANCCCC CCCNNGGGNT NCCNGGNNCC NCNCCCCNTT TNNNNCCCCN 
    NAAAAAAAAA NNCCCCCCCN NNTTTTTAAA AANNAAAAAA AAGNGNNTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26439163 [Map]; Strand: c
      • AT5G66140.1 - [+] show detail - proteasome alpha subunit D2
        Distance: -399; Region: promoter
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon25 (CDS)
    Flanking Genome Sequence: 54-1997-2 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCCACTTTCC ACTTCATCTT CTCCTTCATC TTTACTTTCT CTTGATTTGC 
    TGACAAACTC ATTTCCGTCA CTTCTTTGAT CTGCAAAAAT AGTATGGATT 
    CATTCACCAC CTAGCTAGCT AGTATGTTAG AGTATCTCTC CACATGTAGA 
    TGAGCAAGTG TGTTTCTTAC CATTTTTCCG GAAAACAACT TCTTCAACTC 
    AACTTTAGCG ATTTTAGNAG TTAAATCCAT TTGGTCCTTT TCTCCCGCCT 
    GTAGCAACGC TCAACACTCA ATTACTGTCA TGTATATNCC AATTCAAGAA 
    CATCTAACTG NACGTACCTC GTAGAGATGA GCCAGGCGAA NAANGACGTT 
    CCCGANATCC AACTTCCTCA AGAAGNGATG AAAGCCAATG GTTTTTGAAG 
    GCANGGGGAA ANAGATCCAN GCATAACCCT TCCCAGGATT TGAGGGTTTC 
    CAATTTNTCC CTGGTCNCCN NNNNCCCANN NAGCAGNTGA AAGNGGGGGG 
    GGTTTTTTCC NGGGCCGGGN TTTTGGNTNC ACCGGCCCCC CCTTTTCCNA 
    CCCTTNTTAN GGGGCTAANA AAGGAAATCC CCNCAAANTN GGGNTTTCCN 
    CAAANTTTNT TTAAAGNTTT TTGNCNGGGG NAAAAANANC ACNAAANTTT 
    TNAAAAAAAN AAATTNNAAC CNCGNAAACN CNGGCGGGGG GGGNTTTACC 
    CCCCNCGGGG TTTTAAANGG GTTTN

AT5G66140.1

Model type
Protein coding
Short Description
proteasome alpha subunit D2
Curator Summary
Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.
Computational Description
proteasome alpha subunit D2 (PAD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, proteasome core complex, alpha-subunit complex, chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit PAD1 (TAIR:AT3G51260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR