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54-2018-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14831560 [Map]; Strand: c
      • AT2G35190.1 - [+] show detail - novel plant snare 11
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 54-2018-1 - 5-prime edge 
    TGTATAACCA TCCTCATTAT CATCAATCAC CATAAATATG AGCATCAGTT 
    AAGCAATTAG CAAAAGTGTG ACCTACTTCT TCTTAAGAGC AACATATGAG 
    TTGAGTTCCT TAACCATAGA TTGTCGTCTA TCGTTCAACA TCCGGTTAGT 
    GCTGGCATCA TTACCGCTTT CCAAGCTACC AGCCCGGNCG NNGACCANGC 
    GNNNCCCCTA TANCCGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14831676 [Map]; Strand: c
      • AT2G35190.1 - [+] show detail - novel plant snare 11
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-2018-1 - 3-prime edge 
    GTTATACAGA TACTCATCAA ACCTAGCAAG CAATAACAAG CGAGTAGATC 
    TTTTCGATGG ACCTGGAGAA GAACACATGG AAGAAAATGT CTTATTAGCT 
    TCAAGTAAGT CTTTAAATCT CGTATTTTGC GACCAACTAA CAAAGAGATA 
    GATATTTATT GCACTTTGTT GTTATATGAT TACATACAAC CTAACTAGAG 
    TATTTACTGG AAACTTAATA ACTCTCAGAC ATGTCCAATC AAGAGTTAAT 
    GGATAAAGGA AACTCAATGA TGGATGACAC AGATCAAGCT ATTGAGAGAG 
    GGAAAAAGGT CCGTTTTCAG ATTATATGAA TGTCTTATTG TCTCTTGAAA 
    TTTCAGTCTA ATGTTCATGG AGCCGTGAAT GCCATGTGAT AACTTGTGTC 
    CATTTTTCCA TCTTCACTAA AGCAAAATCT CACTGCTTTT TTTGTGTCTG 
    TGACAACAGA TTGTACAAGA AACTATAAAT GTGGGAACAG ATACTTCAGC 
    AGCTCTCAAG GCTCAGGTGT GTAGTTAGCC CACACTTGTT TCTTTCCAAA 
    CAGTCCTGCT TCTACCTGAA TCTCATTTTT TTCCAAGATT GTGTATTTGT 
    GTGTGAATT

AT2G35190.1

Model type
Protein coding
Short Description
novel plant snare 11
Curator Summary
plant-specific SNARE located in cell plate of dividing cells. cofractionates with the cytokinesis-specific syntaxin, KNOLLE, which is required for the formation of the cell plate.
Computational Description
novel plant snare 11 (NPSN11); FUNCTIONS IN: protein transporter activity, SNAP receptor activity; INVOLVED IN: cytokinesis; LOCATED IN: plasma membrane, cell plate; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Sec20 (InterPro:IPR005606); BEST Arabidopsis thaliana protein match is: novel plant snare 13 (TAIR:AT3G17440.1); Has 871 Blast hits to 814 proteins in 236 species: Archae - 12; Bacteria - 157; Metazoa - 137; Fungi - 78; Plants - 153; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).
Link
InterPro Scan - TAIR