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Mutant Lines
54-2061-1

54-2061-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 24355157 [Map]; Strand: w
  - AT5G60580.3 - [+] show detail - RING/U-box superfamily protein
    Distance: 0; Region: exon2 (CDS)
  - AT5G60580.4 - [+] show detail - RING/U-box superfamily protein
    Distance: 0; Region: exon2 (CDS)
  - AT5G60580.1 - [+] show detail - RING/U-box superfamily protein
    Distance: 0; Region: exon3 (CDS)
  - AT5G60580.2 - [+] show detail - RING/U-box superfamily protein
    Distance: 0; Region: exon3 (CDS)
Flanking Genome Sequence: 54-2061-1 - 5-prime edge
```
CCTGTGACTC CTGTTATTCT TTCAAACTCA GAGTCAGCTC ACGGAGGAAC 
CAGTGTTGCT CCTCAAACTC CAAACGTAAG CT
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 24355085 [Map]; Strand: w
- AT5G60580.3 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon2 (CDS)
- AT5G60580.4 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon2 (CDS)
- AT5G60580.1 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon3 (CDS)
- AT5G60580.2 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon3 (CDS)

GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATGACTA 
GGTAGGGACG AAGTTCTCTT GATCCTAGGT GTAAATAGCT TTGAAAGTGA 
TAATGACCTC GATATCGAAG CCTTCTCCTG CGATGCAGGA GGAGAACAGG 
CATTCCCTTG TCCCTTCTCG ATATCAGTGT TAGAGGTTTT TGGTTTACAC 
CCAGCTTTTG GCAATAGATT CTTCAGGGAC GATTTGCCAC GAGGAAGAAC 
AGAAGAAGAA GTAGGAGTAG GACCTGGAGA ACTCGAAGTC AAAGCAAAGT 
TGACTCTTCT TGGAGTTGGA CTAGGCGTTG GAGGCATTTT GATAACAACC 
GAATCTTCAG GAGAGAGACC AGCTGCTCTA GAGGGTATCT GTAAAGAGAG 
ATTCTTTCGC CTCCATTGTT GAACATTCGC AGAAGTGTCT TCAGTTATAG 
CAGATGATCC TTCAGCCTTC TCATCAAGAA CAAAGAGGAA AAGTAACAAA 
AGAGTTCTAT GAGAATTCAA ACAACACCTC ANTTCCTTAA NAAAAGTAAT 
CCCTTGGATG AAACTAACAA CACTNATCAN AGATTTANGN TCCCAAAGCC 
TGAATTTTTC NAACATGACA AGCNNTTTTT GGCNNNNNAN NNNCNCAACA 
AAAACNTNTA TATTTTNAAT TNCNTTNNNN AAACNCNNNN NANTNNTTNN 
ANNTNAAATN TTTNNAACCC NNNNNAANCN TTNNNTAAAN NNNNNTNAN

AT5G60580.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1); Has 1587 Blast hits to 1239 proteins in 158 species: Archae - 0; Bacteria - 10; Metazoa - 421; Fungi - 112; Plants - 632; Viruses - 18; Other Eukaryotes - 394 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60580.2

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1); Has 1580 Blast hits to 1234 proteins in 158 species: Archae - 0; Bacteria - 10; Metazoa - 420; Fungi - 112; Plants - 626; Viruses - 18; Other Eukaryotes - 394 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60580.3

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60580.4

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1); Has 1580 Blast hits to 1234 proteins in 158 species: Archae - 0; Bacteria - 10; Metazoa - 420; Fungi - 112; Plants - 626; Viruses - 18; Other Eukaryotes - 394 (source: NCBI BLink).
Link: InterPro Scan - TAIR