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54-2077-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29600455 [Map]; Strand: w
      • AT1G78700.1 - [+] show detail - BES1/BZR1 homolog 4
        Distance: 0; Region: intron1 (CDS)
      • AT1G78710.2 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 42
        Distance: -798; Region: promoter
    Flanking Genome Sequence: 54-2077-1 - 5-prime edge 
    TNCCAGGTCG AGNNNATTCT CAGATGANAC TGACCACAAA AAANGAAAGT 
    AGCATAGATC TCAATAAAAA CTGATAAAAA TAATGTCCTC TTGCACAGAA 
    TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29600382 [Map]; Strand: w
      • AT1G78700.1 - [+] show detail - BES1/BZR1 homolog 4
        Distance: 0; Region: intron1 (CDS)
      • AT1G78710.2 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 42
        Distance: -871; Region: promoter
    Flanking Genome Sequence: 54-2077-1 - 3-prime edge 
    GAANACGGNA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCTGGA 
    CAACAAGTGA ATTAGTCACA CACACACACC ATGAAACAGA GAGAGAAAGA 
    ATCTTTTTTT AGAGAAACGC ATAATAAAAA GTCACACATA AAGAATCTAA 
    CATTTGACTA ACGCTCCTCT AAGCTAAGGC TAGCTAACCT ACGCGGAGAG 
    GTATATCAGG AACACGTTAG CATTCACGCG ACCGATCGGC TCCGGCGCAT 
    GTTAGATGCA ATCAGTAATT TAACAAAAAC TGAATGATTT TGTATCCAAA 
    ATTCAAAAGT TTCATGTACT TGAAGCGTAG AGAACAAAAC TAAGATCCGG 
    ATTCGAGAGA CAAACCTTGC GGTAAGTAGT TCCATCAGGT TCGACGATCC 
    AACCAGCTTC GTTACAGAGT GCTTTAAGCA CTTCGTTGTT GTCGCAATGC 
    TTCGGAAGCT CGTAATTACC GTACATTCTT AATCCGGTGA AGATCTTAGC 
    TGCGATTGCT CTCCGTCGTC TTTCTCTTCT CTTGTTGTTC TCTCTTTCCC 
    TCCATGTCGG CATTCTCGTC CCTGATGTCA TCACTACTCT CTGTTTCTTC 
    TTCCTCTGAA AACTCTCTGT TTCTTCTTCC TCTGAAAACT CTCTGTTTCT 
    TTAGCTAGAT CAAAGATAAA ATTCGAAGCT AAACTCAAGC TAATTCAACC 
    TAAGAAAGAG TTCCTGAATC TTCGGTGAAG TAATATATCA GATCTGGCAT 
    CA

AT1G78700.1

Model type
Protein coding
Short Description
BES1/BZR1 homolog 4
Computational Description
BES1/BZR1 homolog 4 (BEH4); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BES1/BZR1 homolog 3 (TAIR:AT4G18890.1); Has 3228 Blast hits to 573 proteins in 95 species: Archae - 0; Bacteria - 18; Metazoa - 254; Fungi - 109; Plants - 296; Viruses - 0; Other Eukaryotes - 2551 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78710.2

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 42
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 42; INVOLVED IN: biological_process unknown; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 43 (TAIR:AT2G30900.1); Has 1785 Blast hits to 1336 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1785; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR