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54-2081-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11032613 [Map]; Strand: w
      • AT4G20460.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G20470.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2081-1 - 5-prime edge 
    CGNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC GGACCACAAC TACGAGACCT GGTCACCACT 
    CTCTCCTCCT TCCTTCTATT AAGCTCCTTC CTTTTTATGG AAATGAAAAA 
    CTTACAAACC AGTCCTTCAA CTTTAACCTA ATTTATTTTT AAACCCTCAA 
    GTATTTTTGT ACATGTTTAA ACCTTAGTTT GTAGATATAG TGGTTGTAGT 
    TTTTTTTTTT TTTTTTTTTT TNGGGGGGNA AAAAAGGGGG GGGGGNTTAA 
    AAANGGGGGA AANNNNNNNN AAAANTTTTT NNAGGGGGGN AAAAAAAAAA 
    ANGGGGNNNA AAAANNNNNN GGNNAAAAAA AAANGGGGGG GGGNNAAAAA 
    AAAAAAAAAN GGGGNNNNAA AAAAAANNNN CCNANTTNGG AAANGGGGGN 
    CNNNNCNNNN GNNAAAAAAA ANGGNNATTN GGGGGGGNTT TTTTNNANNN 
    AAAANNCCCN TTNNNAAANN NNNNCCNGNT TTTNNCCCCN AAAAANNGGG 
    GGGGNANCCN AAATTTTTCC NAAAATTTTT TTNTNTTTTN NNNNNANNGG 
    GNTTAAAAAN NNNCCNTNNT TTTNAANNNN GGNGGGGGGG GTTTTTTAAN 
    GGGAAAAAAA AAAAAANGGG GGGGNCCNAN NGGGGGGNNC NCAAAANGNG 
    GTTNNCNNTT NNGGGGGAAN AAANNNAAAA NNNNNTTTTN NGGGGGGNNN 
    NNNNNAAANN NNTTTGGGGN NTNNANNAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11032569 [Map]; Strand: w
      • AT4G20460.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G20470.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2081-1 - 3-prime edge 
    GTTGTGGTTT CGTTTTGCAT TGCACGTTTC TTCTTCTTTC TTCGCTCCTC 
    ACTTTCTTCT TCTTCCTCCG CTTCTCCTCT ATTTTCTCTC TCTCTCTCTC 
    TCTTTTTCTC TTTCTCCCAA AAGTCTCTCT TACGTTCTTC TCTCTCCCTT 
    AATAACGTCG CGTCTTTCTC CATTTCAACC ATCACACAAC TCTTCTTCTT 
    CCTCCTCTCT CTCAATTCGT GTTTTCCCAA ATTCTCAGGT ACTCTCTCTT 
    ATCTATGTCT TGTCTCTTCC TATTTACCCA ATTCATTAAC CTGATTTTGT 
    TCTGTTTCTG CATTTTGCCC CACTTTTGAA ACGAATT

AT4G20460.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity; INVOLVED IN: galactose metabolic process, cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G30620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20470.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR