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54-2095-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1366929 [Map]; Strand: c
      • AT2G04090.1 - [+] show detail - MATE efflux family protein
        Distance: -2239; Region: intergenic
      • AT2G04100.1 - [+] show detail - MATE efflux family protein
        Distance: 9961; Region: intergenic
    Flanking Genome Sequence: 54-2095-1 - 5-prime edge 
    AGCTATAGTC ACTGCTTGCA TGAGTTGGAA CGAGCAGGTT AATATCAATC 
    TGAAATATTT GTGTGGACAT TTGATGACTC TTTGTTTTCC GTACTGAGGT 
    TGCTTACATC TTGAATTTGC AGGCNTGCCA AGGCAAGACA GAGAATAGTT 
    GTAAGAACTT CTTCATTTGG CAATGGACTT GCTTGAATGG TTCTTTATTT 
    CCATTTTTGA GACAAGTCAC ATTATAATTT TTTTTTCCTC AATTTTGTTA 
    TAATCATCAT CACAGAATAT TGGAGTGAAA ATGACATCTA TATAAACAAT 
    ATTTCTATTT AACGAATGCA TATTTATCAC CTTTTTTTCT TTTGNGTAAA 
    GATGCATATT AATCACTTAT GTAAACAATA TTACTTAGCA TTGGCTTGTA 
    TAAATTAATA TAATAAAGTT GTTTATAAAA AAATATTATA AAATTTTAAA 
    TTTAACTAGT ATCTTATATC TGTTTTACCT ATCTGTTATT AAGAGTCGGA 
    TTCGAAACTC ATGTTAAAGT AAATTTAAAA GAGAGAAAAG TGGTTCAAGT 
    TCATTTACTC TATTTTTCAA AAAAAAAAAA AAAATTTTNC TTTTTTTTGG 
    GAAAAAAAAA ANTTTTTTNN NNNAANTTTT TAAAAANNNT NTTTTTTTNC 
    CCAATNCCCN NNANNNTTTN GNCCCNTCCN TAAAAAAANN ACNAAANGGN 
    NNNCNNAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1377236 [Map]; Strand: c
      • AT2G04100.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 54-2095-1 - 3-prime edge 
    CTATAGCTAG TATGATTCCT TGCGCCGTAG ACCCAACCAC CACACCGATC 
    CATAGCCCTT TACCATTCAT GTGACACCAA AATCCTAAGA AAAGTCCAAC 
    AGGAGCTCCT AGGAGATAGT AAGCCACCAC ATTTGCCCAA GCTCCAATAT 
    GTTGCCATCC ACTTCCCCTA GCAACCCCTT TTCACAAAGT CATAACAAAC 
    AAAACACATT TTGAGTCGCG TAGATCGATT CTTTTATTTG ATTTGCTAGT 
    TAATGGGTTT GATTTTATTA CCACCAAGCA CTGCAGAAAA TCCATCAACC 
    AAAAATGAGA TACAAAGCAA AGGAGATAGC TCTGTGACAT AGTCCACAAC 
    TTCTTTGCTA TTGCTGAAGG CGTAGCCGAA GATATCTCTA CAAATGAAGA 
    GAAGTGTGCT ACAAATGGTA GCCTCTAGGA ACCAAAGGAA TATACCGGCA 
    AACACTGCCA GCCTCGCAAC CTCGGGATTC CCCGCTCCCA ATTCGTTTGA 
    AACCCGTATA CTGCCAAGGG TAAATAGTGA GACTAATCTG ACAATTTCCA 
    AACAAACATT GAATAAGTAT TATCCGAATC ATACCTTCCA GCCGCCCCAA 
    TACCCATTGG AATGACATAG TGGAGAGATG ATGTTGTAAG ACTACATGAA 
    CACAGCAACA ACAACCAACA AGATTACATC ACTAAATTAG ATAATAAAAG 
    GAAGAGTAAA ATTGGNTTAT GTGA

AT2G04090.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04100.1); Has 9714 Blast hits to 9643 proteins in 1968 species: Archae - 172; Bacteria - 6792; Metazoa - 143; Fungi - 326; Plants - 1316; Viruses - 0; Other Eukaryotes - 965 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04100.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR