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54-2143-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23131602 [Map]; Strand: c
      • AT3G62528.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (CDS)
      • AT3G62529.1 - [+] show detail
        Distance: -44; Region: promoter
      • AT3G62530.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -536; Region: promoter
    Flanking Genome Sequence: 54-2143-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATA 
    ACCGTTCTTT GAGAAGGAGC TCCATTAGAG TTACTCACAG CTTTCAATGG 
    CTTCATTGCT TCCTCATTTG CCTGATGCTG CGGTTTACAC GTGTCTGATC 
    ACGGGGTTTG GGACTCAGAA GAAGCTGGTT ACNTGTTTAC GAACTTGCTC 
    AAGGAGATGC AAGAAAAGGG ACATCCTCCG GATGGCAAAA CGTATAATGC 
    GCTGATCAAA CTGATGGCGA ACCAGAAAAT TTCGGAACAT GCCACAAGGA 
    TCTACAACAA GCTGATCCAG AACAATATTG AGCCATCGAT ACACACATTC 
    AACATGATAA TGAAGTCATA CTTCATGGCG AGAAACTATG AGATGGGGAG 
    AGCAGTTTGG GACGATATGA ACAATTGAAT TAATATTGAA AACTAAGAGA 
    AATTTGGTTT TGGGTTATTA CAAAAAAACA ATTACAGTAT TAGCCAAGAA 
    AAGAGAGAGT TTGCTCTTAT AGGGTCTAAA AGAAGGCCCA TTTACAAATG 
    GGCTTGTTAG TTTAAAGGAC TGGTGCTTCT CTTCGTCAAT GGAGGTTGGT 
    ATAATTAATA GGTACGAAAG AAAACCCTAT TTGCGCCGCA TCTCTCTCGT 
    CTTCCTTTAC TCCGTCAAAA CCATGTTTCT AAGTCAGTTC CGGAGCTGTA 
    AACCTTTGCT CGAGTCTCGT CTACCTTTGC TCCGCCTCTC TCTCTCTAAT 
    GTCTCGATCA GTCCTTCAAA CCACG

AT3G62528.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62529.1

Model type
Pseudogene
Curator Summary
pseudogene of pentatricopeptide (PPR) repeat-containing protein
Link
InterPro Scan - TAIR

AT3G62530.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: lyase activity, zinc ion binding, metal ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleolus, chloroplast, phycobilisome; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), PBS lyase HEAT-like repeat (InterPro:IPR004155); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G58180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR