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54-2175-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25842247 [Map]; Strand: c
      • AT5G64660.1 - [+] show detail - CYS, MET, PRO, and GLY protein 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2175-1 - 5-prime edge 
    CTTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TCTGTTACAG AGCAATTGCT CTCCCGCCGT 
    TAGACGTATG TTAACGGATC TTCTTAAGGT CTTCAAGGTG AATTCAAGAT 
    C

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25842263 [Map]; Strand: c
      • AT5G64660.1 - [+] show detail - CYS, MET, PRO, and GLY protein 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2175-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTAACAGTAA CAGAATTTTC 
    GTAACTCCGT TAACACTTGT AACAGCTTCC AAAGCTACCA GACCGGGCNG 
    TAAGAG

AT5G64660.1

Model type
Protein coding
Short Description
CYS, MET, PRO, and GLY protein 2
Computational Description
"CYS, MET, PRO, and GLY protein 2" (CMPG2); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G09800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR