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54-2184-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26365893 [Map]; Strand: w
      • AT5G65920.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-2184-1 - 5-prime edge 
    CTTGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGNGATTT 
    TCCCATCCTA CTTTCATCTG ATGACGAATT TGTGAAAGAG GAAGAAGGAG 
    AAGAGAATTG GTTGTGGNGT GTGNTNCNGG GAGNTNGACG TGNGTGGNGC 
    TGAGAGGGAN ATTATNCAAG CGGANCANAC CCNTTCCNCA NAGGGGGNCG 
    NTNTGTTTTG GTGGGCACCA CCGNNCATCN GGNTCCAAAC GCCTTCNNGG 
    TGCNNGGNAN CTNCCNANGN NCCCNANANC CCCCTATNAA ACCCCCCATT 
    ATNTTGTNNG CCNGGNCCNC CNCCGGGATN AACCCGCTCT ACAAATNAAT 
    NATANCCCCC TNCCCCCAAA ANGGGGGCCC TNCCTCCNGG NGGGTTAGGN 
    NGCCNTTTTN CCCGTTNGGT GGANCNAANA TGCCCCCTTT TTTTTNNAAA 
    AAANAGGGGG GGTTNTNNCT TNGNTTTTTC CNNGACCNAA ANAAANACCN 
    CCNNTNTTTT TTTTGGGGNC CNCNAAAAAA AAACCGGNCN GNAAAAAANA 
    ACCCNTTTNG GGNGNCCCTN TTTTTTTTTT NTNTNNGAAA AAAANNNGTG 
    GGGGNNNCNC NCNGANGNNT NTTTTTTNCN CNNNNNAAAA AAAAAANAAA 
    AATAAAGGAN GGGGGNTTTT TNNTTTTTTT TTAAAAAAAA AAAAAANANC 
    CCCCCCNGGG GGGGGAAAAA ANAANNNNCT TNNTNNNTTT TNCNNCCCCC 
    NNNNNGNNTT NNNCCNNGNC NNNNNNAGAA AAAAAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26365887 [Map]; Strand: w
      • AT5G65920.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-2184-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    GGGTATTCTT AAATTTCTCA CAAATTCATT TACTTTTTTG TTCTGTTCCG 
    AGATTTCAAG GTTCACTATC GATTCTGAAA CTCTTGGAAC AATCCAGATT 
    CTTGGTTAGC AGGTGGGGAA GCATTAATCA TGTATTTATG ATACACNTGC 
    TCCATTATTA TTACGAGAGA GTTGAAAGTT TCCTTTTTGA CTCGTTTTTA 
    AAGGCAAGGA AGAAGAAAGA CTTTGTTTTT AAAATGCCAA TGTTTCAGCC 
    TTCTAAGAAC GGTGGGTTTG ATGGGCATAT CTTAGATCTA CACACGGCGG 
    TTAAAGACGG TGTTCTTGGC GGCGGAGATG GGAAATTTCT GGTGGTTGTT 
    ACCGATGAGA AGAAGAAATT GGATTTGAAG GAGATGATTT CTGAGCTGGA 
    ATTACCTGAA ATACCCTCTG TTTTCATCTG TCCTATTTCT CTAGAGCCGA 
    TGCAAGATCC AGTGACCTTG TGTACTGGTC AAACCTACGA GAGGTCCAAC 
    ATTCTCAAAT GGTTCAATAT AGGGCATTGT ACTTGCCCAA CGACGATGCA 
    AGAGCTTTGG GATGATTTGG TCACTCCTAA CAAGACTCTT CACCAATTGA 
    TCTACACTTG GTTTTCACAG AAGTATGTTT TGATGAAGAA ACGATCTGAA 
    GATGTGCAAG GACGTGCTAT TGAGATTCTG GGTACGTTGA GAAAGGCTAA

AT5G65920.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G49810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR