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54-2206-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26442643 [Map]; Strand: c
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: 54-2206-1 - 5-prime edge 
    CTCTCTGCAG ATATGCGGAT CGGGCATACG CTTACTGGAC TGGCTACTTC 
    ACCAGCCGTC CTGCTCTTAA ACGATATGTT CGGGCTCTTA GCGGATACTA 
    CATGGTATCA AACTTGCATC TTACNGGAGT CCGATTTCCC ATTTTCTTAG 
    TGAAATTCAA AATGAATTTA CATGGCCTTG CATTTGTCTG TTTTTTTTCC 
    AAAACAGGCT GCAAGGCAAC TTGAATTTCT GGTGGGCAAG AACTCTGGAG 
    GTCCAAACAC TTACAGTCTT GGGGATGCTT TAGGGATAGC GCAGCACCAT 
    GATGCTGTCA CTGGAACTGC CAAGCAGCAT GTAACAAATG ATTACATGAA 
    ACGCCTTGCT CTTGGTGCTT CTGAGGTAAG ATACTATATA TGAAAACTTT 
    TTTCTTTTTT GTCTTTTTTC TTATATCAGT AATCATCTAA TTATTCCGTA 
    GGCAGAAGCT GTGGTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26442759 [Map]; Strand: c
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 54-2206-1 - 3-prime edge 
    GCAGAGAGTA GGGGGAAATT ATTGACTATT GAGAAAATCA AGTAGTTGAA 
    CAAAAGGAAT ATGTAAATTT ATTTGGTGAC AGTACTAAAG GCACTCACGG 
    GAAAAAGTCA TGAGTCTTGA GAGGCCAAGT AACATTGGCA ACATTCTTGG 
    CATCAACATA GAGAGATGGT GTGGAGTACA AGGCGTTCAC ACGGCCATCC 
    TGTTGAATGG AATTATTGGT GATGAGAATC TAGTCTCCAA AGACAGCGAG 
    ATTGATATTG AGCAATCACA GCAAGCAAGA GATATGAAAA CCTTGTTAAC 
    ATAATGGATA AGTCTGTCCA TCTGTCTGAA CCAAGACTCG GCGAACTGGT 
    ACTGAAAATC ATCGCCCATT GTCCACATCA CATGGTTCCC TCGACTCACA 
    TTAGCCTATG TCCACATTGA CTACTTTCAG AATTAATCCA AGATTACACA 
    CACACTTGAA AAAAAAAAAA NTCNTCNNNA NANTTTCCTT AACCAAAAAA 
    NCCTTNGCCA AATTNTTTAC CCCCCNCNTT ATNNTTTTAC CCTTCAAANC 
    NNGGGTNNCC CNNCAAANNN NCAAGGNATT GAATTTNCCA NCCGGGNCNG 
    TAACCGGGGN NNNTTTTT

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR