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Mutant Lines
54-2222-1

54-2222-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 20693680 [Map]; Strand: c
- AT1G55420.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: 0; Region: exon1 (CDS)

NAATTNTAAC CCGAGTAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
TTTCCCATCC TACTTTCATC CCATATTATT TGATGTATCT ATAATACCTA 
AATATTGGAG AGACAGCTCC GCTACAGAAG AATCTTCAGA TGAATCGATA 
AACCAACTAA CTATTGAGTA TCTTGGAGAC GTTAGTGATG ATGACNGGCG 
AGGACAGCCA TTCTGATCAC GATCTTGGTG CTAGTGAAGA TGACGGCGAG 
GACAGCCATT CTGATCACGA TCTTGGTGCT AGTGACGATG ACGGCGAGGA 
CAGCCATTCT GATCACGATC TTGGTGCTAG AGACGATGAT GGGAATGGCA 
ATGGCGCTGG CGATGTTCAT GCTGATGGTG AGGCCTCTTT ATCCGATGGA 
AATCACCTAA AATGCAAATG TTGTGGGGTT CCTTTACAAA TGACATATTA 
TCATTGTTCT ATCTGCAAGT TCAATCTTAA CTTGGATTGC TCGATGAGAC 
AACCACCTCC CATTATCTCA CACTTGAAAA GTCATGAGCA CACCCTAACC 
CTCTTCCCTA TACGACTCCC TTTGCCATGT GATGCTTGTG GCTNGTCTCT 
AAACGACACC GAAGATCTGG TTTACTCTTG TCTACCTTGC AGCCGTATGG 
TCCACAGATC ATGTATCTAT CTACCTCGTG TCATTAAGAT CACCCCGACA 
CCAACATCGT CTCTCTCACA CTTTCTTCCT TTCAACCTGG TGATTTCTCT 
TGTGGAGTTT GTCCCCAAAC T

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 20693678 [Map]; Strand: c
  - AT1G55420.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 54-2222-1 - 3-prime edge
```
TTGAAAACGG TAGAGGTATT TTACCGNCCG TTACCGACCG TTTTCATCCG 
TGGGATCTGA GGAGAAGAAG CTGAGAGGGT GAGAGGGGTG AAAAGAGCTT 
CTTATCACCG GCAGAAAGAT GTGACAACCT CTGTGGAATT
```

AT1G55420.1

Model type: Protein coding
Short Description: Cysteine/Histidine-rich C1 domain family protein
Computational Description: embryo sac development arrest 11 (EDA11); FUNCTIONS IN: zinc ion binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G55380.1); Has 31248 Blast hits to 2717 proteins in 273 species: Archae - 49; Bacteria - 26496; Metazoa - 873; Fungi - 230; Plants - 1563; Viruses - 57; Other Eukaryotes - 1980 (source: NCBI BLink).
Link: InterPro Scan - TAIR