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Mutant Lines
54-2223-1

54-2223-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 20693677 [Map]; Strand: c
- AT1G55420.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: 0; Region: exon1 (CDS)

GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCA TATTATTTGA TGTATCTATA ATACCTAAAT 
ATTGGAGAGA CAGCTCCGCT ACAGAAGAAT CTTCAGATGA ATCGATAAAC 
CAACTAACTA TTGAGTATCT TGGAGACGTT AGTGATGATG ACNGGCGAGG 
ACAGCCATTC TGATCACGAT CTTGGTGCTA GTGAAGATGA CGGCGAGGAC 
AGCCATTCTG ATCACGATCT TGGTGCTAGT GACGATGACG GCGAGGACAG 
CCATTCTGAT CACGATCTTG GTGCTAGAGA CGATGATGGG AATGGCAATG 
GCGCTGGCGA TGTTCATGCT GATGGTGAGG CCTCTTTATC CGATGGAAAT 
CACCTAAAAT GCAAATGTTG TGGGGTTCCT TTACAAATGA CATATTATCA 
TTGTTCTATC TGCAAGTTCA ATCTTAACTT GGATTGCTCG ATGAGACAAC 
CACCTCCCAT TATCTCACAC TTGAAAAGTC ATGAGCACAC CCTAACCCTC 
TTCCCTATAC GACTCCCTTT GCCATGTGAT GCTTGTGGCT TGTCTCTAAA 
CGACACCGAA GATCTGGTTT ACTCTTGTCT ACCTTGCAGC CGTATGGTCC 
ACAGATCATG TATCTATCTA CCTCGTGTCA TTAAGATCAC CCGACACCAA 
CATCGTCTCT CTCACACTTC CTCCCTTCAA CCTGGTGATT TCTCTTGTGG 
A

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 20693678 [Map]; Strand: c
  - AT1G55420.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 54-2223-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
TGGGATCTGA GGAGAAGAAG CTGAGAGGGT GAGAGGGGTG AAAAGAGCTT 
CTCATCACCG GCAGAAAGAT GTGACAACCT CTGTGGAATT
```

AT1G55420.1

Model type: Protein coding
Short Description: Cysteine/Histidine-rich C1 domain family protein
Computational Description: embryo sac development arrest 11 (EDA11); FUNCTIONS IN: zinc ion binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G55380.1); Has 31248 Blast hits to 2717 proteins in 273 species: Archae - 49; Bacteria - 26496; Metazoa - 873; Fungi - 230; Plants - 1563; Viruses - 57; Other Eukaryotes - 1980 (source: NCBI BLink).
Link: InterPro Scan - TAIR