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54-2241-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17538144 [Map]; Strand: c
      • AT5G43660.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-2241-1 - 5-prime edge 
    ATCCCGAGGC TGAGTCTTCT TCCTAACAAC GAGCACAATT CTGATAACTA 
    CGAAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26424886 [Map]; Strand: w
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -850; Region: promoter
    Flanking Genome Sequence: 54-2241-1 - 3-prime edge 
    TNNANAANAA ATNAAANNNN TTTTTTTGGG ANAAGTGTTT TNTNGACCGT 
    TACCGACCGT TTTCATNCCT NNANATCCTC CTGGCAGGAT CAAANCCNNG 
    TCGANTCCGN TNCTNTGACC ACCCTNTCTT CTTNTGGTCC CTATGTNACC 
    TNTGTTGGCN TNTNTGACNG GCCACGGNGG CNCTGNNACC TCCCGTATNG 
    TCAGCAATCA TTTCTTTNAC CNTNTCAGGA NTAACTACTN GTGAGNACTA 
    CTNACCACTG ANTTTTATTA NGNTGTGGGA ACCTTTGGAA CTGANCATTN 
    NTNTATGCNG GATNCNNANG GGAGCACGAT NNCATNTNTG NGANATGNGA 
    TAAGAAGGGC TCATGAAGCA ACCGANATAA GGGTNTTNTA NGGNTGGNGG 
    NCTTNNNANT GGNCNTTGAG GCCGCNTANA NNNTNNGNGN GNNNNNTTGT 
    NNNCTGATCN NNTGTGGTGN TGNGATNGGA NNCTANNATC ACNAANNNCG 
    NNNNAGCTNN NNNNNGNNNT NAAANACCAG AGGGGNNNNC TCNTNNNTTN 
    TAGGTNNNCG GNNGNNNNGN NNNGCGGNGN ANANNAGNNG TNTNTTNNTN 
    NTANGNCGNT NNNNNGTNTC TNNGNGNCNG NNNGTNGTCN CATGACNNNG 
    GCNNGNGNAN GNTTCNNTCN GCNNTNCNNG NNNNCCCNCN CCGTTCNNGN 
    CNGCCNACCN NTNAGCNNGN TNCTGTNCCA NNGCCGGTTC NNGNGTNNGT 
    NNANGTGGNT TTANCCCNNN TCGNGCGCCC NNCANTTGTN ANTGNGTNTN 
    ACNANNNNNC TTNGNNCCNN TNTTTNTCAN TTTNACNANN ACGNGNGNNC 
    NNAGNNA

AT5G43660.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G48740.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR