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54-2248-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2601768 [Map]; Strand: w
      • AT3G08560.1 - [+] show detail - vacuolar H+-ATPase subunit E isoform 2
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-2248-1 - 5-prime edge 
    CTGGCCTCTC AAGACGGCAA GATTGTCTGC GAGAACACTT TAGACGCACG 
    CCTTGACGTC GCCTTCAGAC AGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2601690 [Map]; Strand: w
      • AT3G08560.1 - [+] show detail - vacuolar H+-ATPase subunit E isoform 2
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-2248-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ACCCCACCCG AGCTTCACCA TTCAGACAAA ACCATTATTC ATATATATAT 
    ATATATATAT ATATGGNGAN AAAAANGAGA GAGAGGAGAG AGAGAGAGAG 
    ANANACNGTG TGTTCACGCG CNCCNCCCCN CCCNCGNNGC NCGCGGGNNT 
    CNTGNGANNC NCACNCTCTN TNGGNGNGNG NGNNGNGCGN ACACCCCNCA 
    CANANANAAC NGAAAANACN CANAANNCTC TCTNTNTACN CNNNNNNCCG 
    AGANNNGNGN GNNCCCCGNG NGNGTGNGNN NTACANAAAT CTCTNTTTTT 
    TGNNAAAAAN NGNGNGAGAN NANACTCTNT NNNCNTNTAT ATATATNTGT 
    TTTTATATNT CACACACNNN TNNNGTGNNA TATANGGGGG NGNNNNTCAC 
    ANNGCGCGCT CANAAANNNN NNNNGNGGGG ATATATNNAN ANNAGATATT 
    NTGTGTGNNN NNNANNNGNG GGGGGCNNNG NCGCGCGNNT NTNTTTANA

AT3G08560.1

Model type
Protein coding
Short Description
vacuolar H+-ATPase subunit E isoform 2
Computational Description
vacuolar H+-ATPase subunit E isoform 2 (VHA-E2); FUNCTIONS IN: hydrogen-exporting ATPase activity, phosphorylative mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuole, mitochondrial proton-transporting ATP synthase complex; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, vegetative cell; EXPRESSED DURING: pollen developmental stages, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit E1 (TAIR:AT4G11150.1); Has 759 Blast hits to 757 proteins in 292 species: Archae - 68; Bacteria - 19; Metazoa - 249; Fungi - 151; Plants - 127; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).
Link
InterPro Scan - TAIR