1. Home
  2. Mutant Lines
  3. 54-2252-1

54-2252-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26424884 [Map]; Strand: w
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -852; Region: promoter
    Flanking Genome Sequence: 54-2252-1 - 5-prime edge 
    GTGATAAACT AACAAAATCC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTAACGGCC ATGGAGAAAT CACCAAAAAG GTGGTGAGCA 
    GAGTCTTTGT ACCAGAGAAG GCCGTCTTGT TTGCCTTTGG AATCAGAATA 
    AGTGTGGGAA GTGGTGGAAG AAGAGGGCCA GAGACAAGAG GTCAAAAAGT 
    TGAAGAAAAG GGATAACATC GGGCCTCATC TCATATCATC CCCAACCACC 
    GATTGTTATG CTAAAATGAA TGAATGAAGT ATGTTGAAAA AACAAAAGAA 
    GAGAGAGTCG GAAACTTCCA TTCATTCACT CACACAAAGA GGAGTTTTGT 
    TTAGTAAAAA AAGCAACAGC TGGATGGAGA TCTCAAGGAG ATATAGAGAA 
    ACTATTAAGT TGTAAGTAAC ATGTGTGGAG AGAGATAGAG TGAAAGAAAA 
    AAAGAAAAGA CTCTCTCTGT TTTTGATTTC AGATATTTAT TAGGAACAGA 
    ACAGAGGAAG CCCTTTTCCT TGTATATGAG AACAGAGGAA AAGAAGAGAG 
    ACAATTTATG GATCACAAGA TTTCCAGAGC CTCTCTCTCT CTCTCTCAAA 
    TAACTCTTCT TCTATATTTG ACCATCAAAG ANAGGACAAG AAGACACACA 
    TACGTGTGCA CGTGCACTCC TTAACTCCTC CCATGTGGGA TTTACAAACA 
    TACAATAGCT GGTCTCATTA TTATTATTTC CTTCTTGCCT TGCACCACCA 
    TTGTTAACTC TATTCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26424866 [Map]; Strand: w
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -870; Region: promoter
    Flanking Genome Sequence: 54-2252-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGG 
    CCAACAACCT CCTCGAGGAT CAGAGCCAGG TCGAATCCGG TCCTTTGACC 
    ACCCTCTCTT CTTCTGGTCC CTATGGAACC TTTGTTGGCG TCTATGACGG 
    CCACGGAGGC CCTGAGACCT CCCGTTTTGT CAACGATCAT CTCTTTCACC 
    ATCTCAAGAG TAACTACTTG TTGTTACTAC TCACCACTGA ATTTTATTTA 
    GCTAGGGAAC CATTGGAACT GAACATTCAT GTCTGCAGGA TTCGCAGCGG 
    AGCAGGATTC CATGTCTGTG GATGTGATAA GAAAGGCCTA TGAGGCAACC 
    GAAGAAGGGT TTCTAGGGGT GGTGGCCAAG CAGTGGGCAG TGAAGCCACA 
    TATAGCAGCG GTTGGCTCTT GTTGCCTGAT CGGTGTGGTC TGCGATGGGA 
    AGCT

AT5G66080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR