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54-2334-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 94415 [Map]; Strand: w
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-2334-1 - 5-prime edge 
    TCTGCTGCAA ATTGATATGG TTCCAGTAGA AAGATAAAGG GATTTTTATA 
    AAATACTACT CGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 94333 [Map]; Strand: w
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-2334-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTTCACTGTG CCGACTTGGA TGATTGGAAT AAGAGATTTT CAATGCTTTT 
    GAAAGATTCT TTAAAGCAAG AAGTTATTTC CAGGGAGAAA AAAGATAGAC 
    GGGATTTTGA TAAACTTGCT GCTCTGGCTA CAACCCTGGG ATTGTATAGG 
    TACATCAATC ATGCTGCTCC TTTCTTTCTT CTTTCTCACT AGTATAACCA 
    TTTCTGTTTC TTTTTTGCAG TCATGCATAT GCTAAGGTTG TTGTCTTCAG 
    TAAGATCCCA CTCCCCAACT ATAGGTTTGA TTTAGATGAC AAGAAGCCAC 
    AGAGGGAGGT ATTATCCGCT GCTCCTCACT CTCTTCTCTT ACACTTAACG 
    CAAGACGGCT TGTTTTTCTT TAAAGAGCAG ATATATACAA AAATATTTAC 
    AGGTGAATTT GCATACTGAC CTTCTTCAAA GAGTTGAAGC T

AT2G01130.1

Model type
Protein coding
Short Description
DEA(D/H)-box RNA helicase family protein
Computational Description
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G48650.2); Has 13137 Blast hits to 8990 proteins in 1526 species: Archae - 10; Bacteria - 5358; Metazoa - 2929; Fungi - 1766; Plants - 978; Viruses - 93; Other Eukaryotes - 2003 (source: NCBI BLink).
Link
InterPro Scan - TAIR