1. Home
  2. Mutant Lines
  3. 54-2363-1

54-2363-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 198641 [Map]; Strand: w
      • AT4G00440.3 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: 62; Region: intergenic
      • AT4G00450.1 - [+] show detail - RNA polymerase II transcription mediators
        Distance: -3775; Region: intergenic
    Flanking Genome Sequence: 54-2363-1 - 5-prime edge 
    TGTGTGAAGA TGGAGGGATG TGATAGTGTT TGTTTGAAGT CGTTTTGTGT 
    AACATTTTCA GAGTTTGACA TAACAATGTA TTATGGATTA GGAGTATGAC 
    AATTTCAAAA TGTTTTTTTA TTTTATGAAA ACATAAAGAT ATAAGATTGG 
    GTGAGTTGAT TACTAAATTT GTAGAGATTT TTACTCAAAG GAGAAATAAA 
    TTTTATGGAT CATATATATG TATATAAAGT TTTGGATAAT GTTTTTGTAG 
    TTGTTGCACT TTATGTCGTA CTTAGTGAAT AACATTTTCT TTGATGGGAT 
    ATGGTTATGT GGACACAATG GATAGTACAC CTGATAAAGA TGGATTTTAA 
    GAAATTAACA AACTGAATGA ATTATATACA AACTAATAAA TAATAAAGGT 
    TTTATTCTTT TTAATATAAA TATACATATT TTAATAGTTA GTAAAACTAT 
    TTCATTTTTG TTTTTGTAAA AATTATGTAT AACACTATAT ATAATATGTA 
    TAATGCAACA ATCAACATGT CACTTATATG TTCTTGTTTT AGTATATTAT 
    CCTTTGGTTA CATTATTATG TGATATACAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 198386 [Map]; Strand: w
      • AT4G00440.1 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: 0; Region: exon7 (3UTR)
      • AT4G00440.2 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: 0; Region: exon8 (3UTR)
      • AT4G00440.3 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: 54-2363-1 - 3-prime edge 
    TTCACACAAA CACACTAAAA TAAAATAATA AATCATATAC TATATAATAT 
    CCTGTAGGAA GAAGACTGTC TTTGAAAGTG ATTCTCTGAT GACCCCACCA 
    CTAACAGTTT CTGGTCTGGT CTTTGAAAGG ATCTGATTTC CTCCTTCTCC 
    CTCTCAGTAG TTTCTGATCA GACAGGAGCT CTGTGAGGTT ATTATCTGAG 
    TGAGTAATAC AAACTATCTA CATGGTTCTA TGCTAAAAAT AATTAGCAAT 
    GGTGACAGTG AGGCTATGTT CAGAGCTTGC AGCTGTCTCA ACAATGGCTT 
    TGTCTTTAAG AAAAGAGTTT TCAGCTTTCA AGACCTTTCT AGAATAAGGA 
    TGCTCCCATC CGTCTTCAAC TCAGGTGAAA CCAGAGAGTG CTCAGTGTTG 
    TTGAGAGAGT TGAGAGTGAG CTCTTCGAGT AACTCGTTGA GAATCAGTTC 
    ACTAGTTTCG AAGCCAATGC AGTCAATGTC ACATCTGATG TCTAACCAGT 
    TTCCAGCTCT AGCCATATCT TTTCTAACTA TCTGATCCAA AGGCGTGAGG 
    GGAGTGGCAA TGGCAAGAGA TGCCANTTAA CCGCTTTCTT GAACCTCATG 
    GGATGACGCC TTTTGACGGN TAGAGAAGAC TNCTGGGTCT TGGGTGTAAC 
    AAACGAAGCC CCAAGGTNGG GCAACCATCA TAACTCCATG AAAGCCTTNA 
    TTGATNGCAN TCAAANAAGG ANCCTCAATT GNTCAAGGA

AT4G00440.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1239 Blast hits to 1045 proteins in 162 species: Archae - 0; Bacteria - 74; Metazoa - 262; Fungi - 79; Plants - 239; Viruses - 0; Other Eukaryotes - 585 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00440.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1283 Blast hits to 1059 proteins in 155 species: Archae - 0; Bacteria - 77; Metazoa - 265; Fungi - 74; Plants - 239; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00440.3

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1283 Blast hits to 1059 proteins in 155 species: Archae - 0; Bacteria - 77; Metazoa - 265; Fungi - 74; Plants - 239; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00450.1

Model type
Protein coding
Short Description
RNA polymerase II transcription mediators
Curator Summary
Encodes the Arabidopsis homolog of the transcriptional regulator MED12, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. Involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.
Computational Description
CENTER CITY (CCT); FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: photoperiodism, flowering, regulation of development, heterochronic, regulation of radial pattern formation; LOCATED IN: mediator complex, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med12 (InterPro:IPR019035); Has 216 Blast hits to 184 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 65; Plants - 86; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR