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54-2389-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2886348 [Map]; Strand: c
      • AT5G09300.1 - [+] show detail - Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT5G09300.2 - [+] show detail - Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-2389-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TGAACCTTTA GATTTCTTAT TGTGTTGATA 
    TTCTCCATTC ATTCTGAAGA ATATATGTAT GTGGACCTTG AATGTTCAGG 
    TAATGGACTT TCCAGGAGGA AAGGTAGCTT TCACACCTGA GATTCAATTC 
    ATATCAGAAT CTGATAAAGA GCGTGTTCCT TGCTACCGTG TTCTTGATGA 
    CAATGGCCAA CTTATCACCA ACAGCCAGTT TGTTCAGGTT TCACAAAAAA 
    AACAAGAGAA AGAATTAATC TTTTCCTCTT TTTGCGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19688418 [Map]; Strand: c
      • AT2G48150.1 - [+] show detail - glutathione peroxidase 4
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 54-2389-1 - 3-prime edge 
    TGCTGCGTTT TGACCGTTTA CGCGTACCTA ACCCAACATT CACAAATCAA 
    GACTTGTTAA GTGCATGTTT ATGAATTTCT TGTTATAAAC GAACATACCA 
    CAAGTCACAG CAGCCTAACA TAATAAGATA ATAAACTTTG TTCCAAGAGT 
    CTTGATCCCT ACGTACCTTT TGGAAAACAG GGTATTCGGC CTTAAAGCGT 
    TCGCAGGCAA ATTCATGAGC CTCTTGACTT GTGCCGGGCT CCTGGTATAG 
    AAACTGGTTG CAAGGGAATG CCAAGATCTC AAAATCTGAA AACGAGAGAG 
    CATGAAATGG TAAAACCAAC AAAGGAGATG AGCTTGCAAC TGCATAACAA 
    AAAAGGCCGT AATATAATCA ATGACCTTGG TCCTTGTATT TCCGGTAAAG 
    TTCGGTGAGC TGTGTATAGT TTGTTTCGGT GAAACCGCTG TTTGCGCACA 
    AAACTAAGGA TTAGAGGTGA ATAAGANAAT AGCAAAAGAN CAAAAGAGAC 
    GAACCATTTT GGAAGCAACA TTGACGATGA GGAGGACTTT CCCTTGGTAA 
    ATGCTCATAT TTCAGGTCCT TGCCGGAGCT ATTCTATTNC CAGGAAACAN 
    CAGCCNNCAA CANCGATAAG GAATAAACAA TNTCACAGCG CCCGATGCAA 
    CCTCCTCCTN TTANTNTGAG CGAAAAAGAG AATACCTTTT ACAGNGAATT 
    GATGGACGGG ATCTNCTCGG GGAACCCAAN CCATA

AT2G48150.1

Model type
Protein coding
Short Description
glutathione peroxidase 4
Curator Summary
Encodes glutathione peroxidase.
Computational Description
glutathione peroxidase 4 (GPX4); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress, N-terminal protein myristoylation; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: glutathione peroxidase 5 (TAIR:AT3G63080.1); Has 7346 Blast hits to 7345 proteins in 1724 species: Archae - 2; Bacteria - 3554; Metazoa - 785; Fungi - 210; Plants - 383; Viruses - 8; Other Eukaryotes - 2404 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09300.1

Model type
Protein coding
Short Description
Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
Computational Description
Thiamin diphosphate-binding fold (THDP-binding) superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT1G21400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09300.2

Model type
Protein coding
Short Description
Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
Computational Description
Thiamin diphosphate-binding fold (THDP-binding) superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT1G21400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR