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54-2402-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1416642 [Map]; Strand: w
      • AT4G03210.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: 0; Region: exon3 (CDS)
      • AT4G03210.2 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: 0; Region: exon3 (CDS)
      • AT4G03220.1 - [+] show detail - Protein with RNI-like/FBD-like domains
        Distance: -830; Region: promoter
    Flanking Genome Sequence: 54-2402-1 - 5-prime edge 
    ACCGGCGAGC CTTACATAGT CCAGACCAAT ATCTACGTGA ACGGAGTTGG 
    AAACAGAGAA CAAAGACTCA ACCTTTGGTT CGATCCCACC ACTGAGTTTC 
    ACACTTACTC AATCCTCTGG AGTAAACGCA GTGTTGTGTA AGCTCTCTTA 
    TACAAACAAA GTCTCTTCCT TTATTTGATT ATTGAAGACC CATTTTAATG 
    ATGTCTTCAT TGCAAATACA GATTCATGGT AGACGAAACA CCGATTCGAG 
    TTCAGAAGAA TCTTGAAGAG AAAGGTATCC CATTTGCTAA AGATCAAGCA 
    ATGGGTGTTT ACAGCTCCAT TTGGAATGCA GATGATTGGG CTACACAAGG 
    AGGTCTTGTT AAAACTGATT GGAGTCACGC TCCTTTCGTT GCTTCTTACA 
    AAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1416529 [Map]; Strand: w
      • AT4G03210.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: 0; Region: exon3 (CDS)
      • AT4G03210.2 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: 0; Region: exon3 (CDS)
      • AT4G03220.1 - [+] show detail - Protein with RNI-like/FBD-like domains
        Distance: -943; Region: promoter
    Flanking Genome Sequence: 54-2402-1 - 3-prime edge 
    TCGCCGGTAG TGTTCCCTAA GAACTCAAAA TCGAATTCGT TGTGGTTCGG 
    ACCATCTGAA GACACCAGCC CGNGNCGTCA GACCAGTGCA CTNCTTCAAG 
    ATTTGAGACA TAATAATCAA ATAGGGGATT AAAAACAGAA CAAGAAGAGA 
    TGGGTTTTGT TCCGTACGTA GAAAGCAGTG ACTGTTCCTG CTGAATCACC 
    CTCAACAAGC TTAATCTGGA TAGAGACTTT ACCAAACAAG TATTTGCTTC 
    TTGATTCAAA CCCAGCTCCT GAAAAATTAA ATAAAAACAT ATTCAATTAT 
    AATGAACCCN CNNNANCNGA GGAANNAAAA CANANATGGC TCCNNNNNCN 
    NNGGAAACTA AACANANANN GGTTTGTNTT NNTNTCTTAC CANANTAATT 
    GTNAAGCTTG ANTNNTGNGN GTTNGNCTTC NTTGACACAA TNANNCATAN 
    NCNNNCTNGA CCGATNNNNN TNATCNNACT TANCTNCNNA AANANNNTTT 
    NNNNNNAGA

AT4G03210.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 9
Curator Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational Description
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Beta-glucanase (InterPro:IPR008264), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 2067 Blast hits to 2047 proteins in 283 species: Archae - 0; Bacteria - 225; Metazoa - 0; Fungi - 377; Plants - 1377; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03210.2

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 9
Curator Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational Description
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03220.1

Model type
Protein coding
Short Description
Protein with RNI-like/FBD-like domains
Computational Description
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G59210.4); Has 1478 Blast hits to 1464 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1476; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR