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54-2418-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26445245 [Map]; Strand: c
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: -811; Region: promoter
      • AT5G66160.1 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
        Distance: 0; Region: exon1 (CDS)
      • AT5G66160.2 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2418-1 - 5-prime edge 
    GGGAGATCGG CAAAAGAGGC GGAGATGGAA TTGAGGACAA CAGTGGCGAG 
    TGAGACTCGT AACAGAGAGG AGAGAAAAGG AGCTGCAACT AGTAGACAGC 
    TTGAGACGAC GAGTCTCATC TCTCTCTCTT TTCGCTTTCT CGGTCGATCG 
    ATGGCTTTTC AGTTTCAGGC TGTCGCCGAA ATGCATTGGT TTCTTCACCA 
    GAGAGAACCT TCTACTCGTC TCAGAGGCTT TAAAGATTAG TTCGTTAATA 
    TATATTTTAT ATACGGAATA AAAACGACGA CGTACAAACA AAGCCTCCTT 
    TGCAAGCAAA CAACCCCCAA GTCAAATGAA GAAAACAAAA CAGTTGCAAT 
    GATGTAAATG ACTTGTTGTT GAGATTTTTA TACTAAAATG TTACTAGCTC 
    AAAGATTTGC TTCTATTCTC TGTAAAGACG TGGTTTAATT ATCTCTATAT 
    TGATTGATTT GTGTATTATC AAAGAAAGGG AGATTTTTTC CCAAAACTAT 
    TTGTTAAATA AAATTAAAGA AAAGGTAAAT GACTATTGTC AAAACTCAAA 
    ACAGATCAAC TTCAATTTTA ATGTTGACAT CAAAGTAGAA GAAAAAAAGA 
    TTTAATAAAG TACTATTTTA GGGTCAAGAT TTTAATTAAA TTTGTAGGAA 
    AATAAGATTA TTGTAGAACC TAATTAATTA TTACATN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26445361 [Map]; Strand: c
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: -927; Region: promoter
      • AT5G66160.1 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
        Distance: 0; Region: intron1 (CDS)
      • AT5G66160.2 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-2418-1 - 3-prime edge 
    GATCTCCCAG CCAAATTTGG TCAATTTCTC CCCCTCTTCC TTTTTCCTTA 
    TCCGAAACAA TTTCTCGAAC AATCTGGTTA AAAAGAAGTT GATTTTGATT 
    CTCAGACGGC TCCGTGACCA AAAACGGAAT CTGTGGAGCT CTATACNGTC 
    GCAGATCCTC TCGACGGTTG CTCACCGCTT CTCCACGCCG CCGCATCCAA 
    CTGGACGCAA CACAGAACTA CTAAGTTCGC TTTGATAATC AGAGGCGAAT 
    GTTCTTTTGA GGATAAGCTG CTCAATGCCC AGAACTCAGG TTTTCAAGCT 
    GTGATTGTCT ATGACAACAT TGACAACGAA GATCTCATCG TCAGTAAGCC 
    TTTTGCCTCC CACCCAAGTT TAAAATTCCA TCTTTTCTTC TCCTGATGAG 
    CTAGGGTTGA GCTGAATTTC ATTGGAGTTA TTTAATTTAG TCAACGCCCC 
    CATAAGTTTG GAGATTGACC AACATCTGTT TTGCACAGTG AAGGTGAACC 
    CTCAGGACAT TACAGTTGAT GCAGTCTTCG TTTCAAATGT CGCCGGTGAG 
    ATTTTGAGAA AGTACGCGAG AGGCCGAGAT GGTGAATGCT GCCTTAATCC 
    GCCAGACAGA GGGAGCGCTT GGACTGTGTT GGCCATCTCC TTCTTCTCTC 
    TCCTTCTTAT TGTCACTTTC CTGTTGATTG CCTTCTTTGC ACCCAGACAC 
    TG

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66160.1

Model type
Protein coding
Short Description
receptor homology region transmembrane domain ring H2 motif protein 1
Curator Summary
Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.
Computational Description
receptor homology region transmembrane domain ring H2 motif protein 1 (RMR1); FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: intracellular protein transport; LOCATED IN: extrinsic to vacuolar membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66160.2

Model type
Protein coding
Short Description
receptor homology region transmembrane domain ring H2 motif protein 1
Curator Summary
Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.
Computational Description
receptor homology region transmembrane domain ring H2 motif protein 1 (RMR1); FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: intracellular protein transport; LOCATED IN: extrinsic to vacuolar membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR