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54-2447-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11626419 [Map]; Strand: w
      • AT1G32240.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 54-2447-1 - 5-prime edge 
    CATGGTTTTG CTTTTGCCCA TATTTGCTTA TAAGCCAAAC ATAGATAACC 
    GCACCTCACG GCTTAAGCTA CG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11626303 [Map]; Strand: w
      • AT1G32240.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 54-2447-1 - 3-prime edge 
    AAACCATGGC AGCTTCCATT GAACAATAAG AAATATAATT ATGTATATAT 
    ATTTGTGTCA ATGTCAAACA TTAGTCCATA GGACAATAAA TAGGGTAAGC 
    T

AT1G32240.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
Encodes a member of the KANADI family of putative transcription factors. Together with KAN1, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN1 and KAN4 appears to regulate the proper localization of PIN1 in early embryogenesis.
Computational Description
KANADI 2 (KAN2); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G17695.1); Has 1778 Blast hits to 1772 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 21; Plants - 1618; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR