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54-2546-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17873206 [Map]; Strand: c
      • AT4G38050.1 - [+] show detail - Xanthine/uracil permease family protein
        Distance: -724; Region: promoter
      • AT4G38052.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -353; Region: promoter
    Flanking Genome Sequence: 54-2546-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CATGTATATA CTCTTGTAAT CTATCGTGTC 
    CTGTATCATA ACCTCCTCAA GACTGAGATT GTAAGTGATT GTAGATTGTA 
    TGTAATATTA ACTACCATTG ATCCTTTTAT TGTATGTAGA AAGTAGAAAC 
    ACTATTTGCC ATTGTAATCC TCTTTAAACA TCCTCTGTAT ATCTATCCCT 
    TTATATATAT TTCAATTGGA GAATCAGAAA TATATTTTTT GAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17873253 [Map]; Strand: c
      • AT4G38050.1 - [+] show detail - Xanthine/uracil permease family protein
        Distance: -771; Region: promoter
      • AT4G38052.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -400; Region: promoter
    Flanking Genome Sequence: 54-2546-1 - 3-prime edge 
    ATACATCACT CTCCTTTTTT TGTATTTACA AGACTTTACA TGAATTTCCA 
    AACCAATTGA AGAATCCCAC TCACACCATC AATTTGATCA TCTTGATAAA 
    TATCTTTAGC ACTGCTTTCG TATTCCTTTC TTTCCGGTTT TAATCCTTTT 
    CCAGGATCAA TGTAATTTGA TATCCACCTT CACTTCTTGG ATTTTGATCT 
    GTTTTCTGAA TGTAACCAAT CTTAAAGCTA CTTCTTCTCC ATAGCTTTCC 
    CAACCCCACA ACTTCTTTTT ACTATTTTTT TTTCCCTTTT TCTTGGACTT 
    GATCCGTTTC CAGGATCAAT GTAAGCAACT ACCCATCATC TTAATCTAAA 
    CCATAAAACT ACTTGNGTTT TTTTTTGGGT NCCCTNTTTT NNNTNCCNTT 
    TTTNNCNTTT TTTGGGGGTT TNNAGGANAA ANGTNNNACC CAAAANGATT 
    NTTNAAANNG TTTNAAANCT NCTTNCTNNT ANCTAACTNC CCAGGGAAAA 
    ANCCNGGNNA AAGTTTTNGC AAAAANAAAA NCCNTNGCNC CNNGNAATTN 
    TTCCCATNNG CAANTTNNAN AAAANNNANT NACCACCCNG GGCCGTGAAC 
    CCCGGGGNCC CCTTNAAA

AT4G38050.1

Model type
Protein coding
Short Description
Xanthine/uracil permease family protein
Computational Description
Xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: nucleobase-ascorbate transporter 12 (TAIR:AT2G27810.1); Has 9537 Blast hits to 9467 proteins in 1922 species: Archae - 69; Bacteria - 7876; Metazoa - 365; Fungi - 138; Plants - 431; Viruses - 1; Other Eukaryotes - 657 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38052.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR