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54-2553-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23132775 [Map]; Strand: c
      • AT3G62530.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 54-2553-1 - 5-prime edge 
    GGNAATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TTATACAAAT 
    GCAGCCTAAG AAGAAGCAAA AACAAAATGC ATTTTGAGTT AGAGAACAAT 
    GAGACAAACT CAAAGTCATC AATATATACA TAAAAATTTG ATTGACCTCA 
    ATGCGAATCA TAGAACTCTC AACACCTAGA GATTCTATAA TAACATTTAT 
    GGCATCCTCT CCACCATGAT TCCTCAGGGC AAAAAGTGCC AAGCGTCTGT 
    AGTAGTCTTC CTCTGTTTCC TCCAGAAGAG ATTCCCTATA GTTGATTTTA 
    ATCAATAAAC CTTTCAAAAA TTAGTAAGTT ATCTACAAGT AATTTGAGTT 
    AGTTACCTCA TACTATGGAT TGAACTGATA TTAGCTGCTT TTGGATATGC 
    TTTTGATTCA GCAGGGGCAG AACTATCGAT TGCCCCCCTT CGAGTAACAT 
    AGAAAGTTGC ACCATCCTCC TCATTGACAT GCTTTGTGAC TTTGTTGATC 
    TTACTACCGT ATTCGCTACT AGCCGTGGTT TTGAAGGACT GATCGAGACA 
    TTTAGAGAGA GAGAGGCGGA GCAAAGGTAG ACGAGACTCG AGCAAAGGTT 
    TACAGCTCCG GAACTGACTT ANAAACATGG TTTTGACGGA GTAAAGGAAG 
    ACGAGAGAGA TGCGGCGCAA ATAGGGTTTT CTTTCGTACC TATTATTTAT 
    ACCAACCCTN CATTGACGAA GAGAAGCACC AGTCCTTTAA ACTAACAAGC 
    CCATTTGTNA ATGGGCCTTC NTTTTAGACC CTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23132855 [Map]; Strand: c
      • AT3G62530.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-2553-1 - 3-prime edge 
    GTTGGGACAA TTGGAATCCA AAACAGCTAT AGCTTCTCTA AGCAAGATCT 
    TGAGAGATGT GAAGGAGCAC CCCATGGTTC GAGTAGAGGC TGCAAAAGCC 
    CTTGGTTTCA TTGCAGGTAT ATTCCTAGAA GCTACCACAA TTTTGTGTCT 
    TTAATTAATT ACTCTTTGAC ATTCTTTGGG TTTTTTTTCA GATGAGAAGA 
    GCAGAGAAGT ACTCCAAGAA CTTTCAGGCG ACCTCGATCC CATTATCGCT 
    AAAGGTTGTG ATTCTTCATT GAGTATCTTG GAATTTAAGA ATT

AT3G62530.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: lyase activity, zinc ion binding, metal ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleolus, chloroplast, phycobilisome; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), PBS lyase HEAT-like repeat (InterPro:IPR004155); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G58180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR