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54-2620-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24958511 [Map]; Strand: c
      • AT5G62150.1 - [+] show detail - peptidoglycan-binding LysM domain-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2620-1 - 5-prime edge 
    GGGAATAAAC TAACAAAATC GGTTATACAG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC ATAGTGTGAA GTGTCTCTCC TTCTCCGACG 
    ATGTAAATCT CCTCACAAGG TTTCGTTGAG AATTGAGAAC CTCTAATCGA 
    ATTAGAAGCG TTGTTTTCAC GAACAGATAA CAAAAGTATT AAAGACAATA 
    ACACAACAGC AGAACACCAA GCACTCATGT CTGAAGAACC TGTTCTTGAA 
    CCTCTCATGC CTTTAATTTA TATAAAAAAA AACGCTTTGA ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24388353 [Map]; Strand: w
      • AT5G60680.1 - [+] show detail - Protein of unknown function, DUF584
        Distance: 1377; Region: intergenic
      • AT5G60690.1 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: -8670; Region: intergenic
    Flanking Genome Sequence: 54-2620-1 - 3-prime edge 
    TNAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCAATCAAT 
    CCTTTATTAT TATAACTTGT ATCCGAAAGA TTTTCTCAAC AAGATATTGT 
    CATGTTGTAA GAAAACAACA GACAATTAAT TATATCTTAT GTTGTATGTG 
    TGATCATTGT CATATACTGT TTCTTATATT CAAACACAGA ATATCAAATC 
    CAAACGTAAG AAAATGATTT CATTCATCAA TATTTGCACT CAAATTTCAT 
    AAATAGCAAA CAGAAAAATC TACTTCCGAC TTTTCTACAC AAGCACACAC 
    ACTCTTTACT AAAGATACTG AAACCTTATG TCCCATCTGA TCAAGAAGGA 
    GGATTTCTGC TTGAAACCTT TTTTTATGAG CTCACTTCCA AACCGATTGG 
    GTCTAGGATC ACCTCCTAAA AACAAGTTTT GATTAGTTAT GTAGTTAAAG 
    GGAGTCTTCG AAAGAACATT TTGGCATTCA AAATCGTTTT AGTTTTTTCC 
    TAGTCACTTT CTATATTACA GGTATGTGTC CTAGGTCCTC ATATTCCACG 
    AGGTCCACAG TTTGGCCAAA ACGGTGGGCG TTTGATCAGA AAACGACACC 
    CAACTTGAAA ACCTCCTTAC TCATTTACTC ATTACATTGA CCTTTTGCGG 
    GTCCTTTGAA ATTACAGTCC TTTTTCAACA TTAATATCTT GTAATTATTC 
    AAGGATGGTA CTTATTTCCA TTTATCTTGN TTTCAAAGGG AAATATCTAT 
    TTCAGATTTA AGTTGAAGA

AT5G60680.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF584
Computational Description
Protein of unknown function, DUF584; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF584 (TAIR:AT3G45210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60690.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator Summary
REVOLUTA regulates meristem initiation at lateral positions. a member of a small homeodomain-leucine zipper family. Has overlapping functions with PHAVOLUTA and PHABULOSA.
Computational Description
REVOLUTA (REV); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT2G34710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G62150.1

Model type
Protein coding
Short Description
peptidoglycan-binding LysM domain-containing protein
Computational Description
peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT4G25433.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR