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54-2664-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26442386 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: 54-2664-2 - 5-prime edge 
    GGGNAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA GCATGCTGCT TGGCAGTTCC AGTGACAGCA 
    TCATGGTGCT GCGCTATCCC TAAAGCATCC CCAAGACTGT AAGTGTTTGG 
    ACCTCCAGAG TTCTTGCCCA CCAGAAATTC AAGTTGCCTT GCAGCCTGTT 
    TTGGAAAAAA AACAGACAAA TGCAAGGCCA TGTAAATTCA TTTTGAATTT 
    CACTAAGAAA ATGGGAAATC GGACTCCGTA AGATGCAGTT TGATACCATG 
    TAGTATCCGC TAAGAGCCCG AACATATCGT TTAAGAGCAG GACGGCTGGT 
    GAAGTAGCCA GTCCAGTAAG CGTATGCCCG ATCCGCATAT CTGCAGAGAG 
    TAGGGGGAAA TTATTGACTA TTGAGAAAAT CAAGTAGTTG AACAAAAGGA 
    ATATGTAAAT TTATTTGGTG ACAGTACTAA AGGCACTCAC GGGAAAAAGT 
    CATGAGTCTT GAGAGGCCAA GTAACATTGG CAACATTCTT GGCATCAACA 
    TAGAGAGATG GTGTGGAGTA CAAGGCGTTC ACACGGCCAT CCTGTTGAAT 
    GGAATTATTG GTGATGAGAA TCTAGTCTCC AAAGACAGCG AGATTGATAT 
    TGAGCAATCA CAGCAAGCAA GAGATATGAA AACCTTGTTA ACATAATGGA 
    TAAGTCTGTC CATCTGTCTG AACCAAGACT CGGCGAACTG GTACTGAAAA 
    TCATCGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26442378 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: 54-2664-2 - 3-prime edge 
    TNAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATAACA 
    AATGATTACA TGAAACGCCT TGCTCTTGGT GCTTCTGAGG TAAGATACTA 
    TATATGAAAA CTTTTTTCTT TTTTGTCTTT TTTCTTATAT CAGTAATCAT 
    CTAATTATTC CGTAGGCAGA AGCTGTGGTG AATT

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR