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54-2879-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26434427 [Map]; Strand: c
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -649; Region: promoter
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-2879-2 - 5-prime edge 
    TTCAAGGTGA CAAGCCAAAA CATAAACATA TGACAGACAC TAGGCAAACA 
    AAAAATGTAG AAACAAATGC AGACCTTATC TACAAGACTC GAGTCTTCTT 
    GAGTCGCACT AGCACCCGAA AGGCGAGCTC TCTTTGACGC TCTAGGATTC 
    GTTGCGGTAC CAGCAGAGGA CCTGGGTTTC GACTTGGCAT TAGAACGCGA 
    TGACCTTAAG TTATACGATC TATCGTCATC TTCATCTTCT AGGGATAGTT 
    TTTTCTTAAG CATTGAATTT CCTTTTGCCG AAACCTTTCA GAAATCCCAA 
    TCGCCTTAGG GTTTATGGAA GACGAACGGA ACTTGATCAC TCAATTAAAC 
    TCTCTCAGCA ACGATCCCCA ATTTCCAGAT GAGCAGGAAA CTTCCGAGTA 
    GTCGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26434543 [Map]; Strand: c
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -765; Region: promoter
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-2879-2 - 3-prime edge 
    TCCTTGATGA AGGTCTCGAG TTTCGCTTTT TATATGTCTC GCAGATTAGA 
    TTGTCTTTCG AAGATTTCGA TGAAGCT

AT5G66120.2

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66130.1

Model type
Protein coding
Short Description
RADIATION SENSITIVE 17
Curator Summary
Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.
Computational Description
RADIATION SENSITIVE 17 (ATRAD17); INVOLVED IN: regulation of DNA repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G77620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR